Gene : Medtr2g030540 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  1627 Name:  ? Medtr2g030540
Secondary Identifier:  ? PAC:31067523
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g030540 0.5kb upstream 0.5kb upstream 5011 true chr2: 11519339-11524349 Medicago truncatula
Medtr2g030540 0.5kb upstream 0.5kb upstream 500 false chr2: 11523850-11524349 Medicago truncatula
Medtr2g030540 0.5kb downstream 0.5kb downstream 5011 true chr2: 11518839-11523849 Medicago truncatula
Medtr2g030540 0.5kb downstream 0.5kb downstream 500 false chr2: 11518839-11519338 Medicago truncatula
Medtr2g030540 1.0kb upstream 1.0kb upstream 5511 true chr2: 11519339-11524849 Medicago truncatula
Medtr2g030540 1.0kb upstream 1.0kb upstream 1000 false chr2: 11523850-11524849 Medicago truncatula
Medtr2g030540 1.0kb downstream 1.0kb downstream 5511 true chr2: 11518339-11523849 Medicago truncatula
Medtr2g030540 1.0kb downstream 1.0kb downstream 1000 false chr2: 11518339-11519338 Medicago truncatula
Medtr2g030540 2.0kb upstream 2.0kb upstream 6511 true chr2: 11519339-11525849 Medicago truncatula
Medtr2g030540 2.0kb upstream 2.0kb upstream 2000 false chr2: 11523850-11525849 Medicago truncatula
Medtr2g030540 2.0kb downstream 2.0kb downstream 6511 true chr2: 11517339-11523849 Medicago truncatula
Medtr2g030540 2.0kb downstream 2.0kb downstream 2000 false chr2: 11517339-11519338 Medicago truncatula
Medtr2g030540 5.0kb upstream 5.0kb upstream 9511 true chr2: 11519339-11528849 Medicago truncatula
Medtr2g030540 5.0kb upstream 5.0kb upstream 5000 false chr2: 11523850-11528849 Medicago truncatula
Medtr2g030540 5.0kb downstream 5.0kb downstream 9511 true chr2: 11514339-11523849 Medicago truncatula
Medtr2g030540 5.0kb downstream 5.0kb downstream 5000 false chr2: 11514339-11519338 Medicago truncatula
Medtr2g030540 10.0kb upstream 10.0kb upstream 14511 true chr2: 11519339-11533849 Medicago truncatula
Medtr2g030540 10.0kb upstream 10.0kb upstream 10000 false chr2: 11523850-11533849 Medicago truncatula
Medtr2g030540 10.0kb downstream 10.0kb downstream 14511 true chr2: 11509339-11523849 Medicago truncatula
Medtr2g030540 10.0kb downstream 10.0kb downstream 10000 false chr2: 11509339-11519338 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301843 5265 Fabidae View MSA
124060540 5270 Rosid View MSA
123739783 5271 Pentapetalae View MSA
122791645 5272 Eudicot View MSA
122041926 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.636        
cufflinks 0.86        
cufflinks 0.937        
cufflinks 0.444       Low
cufflinks 1.132       High
cufflinks 0.472       Low
cufflinks 0.464       Low
cufflinks 0.877        
cufflinks 0.757        

0 Strain