Gene : Medtr1g082420 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR30373:SF2 - UPF0603 PROTEIN YGCG Description:  thylakoid lumen 18.3 kDa protein
Genomic Order:  4482 Name:  ? Medtr1g082420
Secondary Identifier:  ? PAC:31096667
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5083 Medicago truncatula pathologic  
Mtruncatula PWY-6348 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g082420 0.5kb upstream 0.5kb upstream 2906 true chr1: 36640029-36642934 Medicago truncatula
Medtr1g082420 0.5kb upstream 0.5kb upstream 500 false chr1: 36642435-36642934 Medicago truncatula
Medtr1g082420 0.5kb downstream 0.5kb downstream 2906 true chr1: 36639529-36642434 Medicago truncatula
Medtr1g082420 0.5kb downstream 0.5kb downstream 500 false chr1: 36639529-36640028 Medicago truncatula
Medtr1g082420 1.0kb upstream 1.0kb upstream 3406 true chr1: 36640029-36643434 Medicago truncatula
Medtr1g082420 1.0kb upstream 1.0kb upstream 1000 false chr1: 36642435-36643434 Medicago truncatula
Medtr1g082420 1.0kb downstream 1.0kb downstream 3406 true chr1: 36639029-36642434 Medicago truncatula
Medtr1g082420 1.0kb downstream 1.0kb downstream 1000 false chr1: 36639029-36640028 Medicago truncatula
Medtr1g082420 2.0kb upstream 2.0kb upstream 4406 true chr1: 36640029-36644434 Medicago truncatula
Medtr1g082420 2.0kb upstream 2.0kb upstream 2000 false chr1: 36642435-36644434 Medicago truncatula
Medtr1g082420 2.0kb downstream 2.0kb downstream 4406 true chr1: 36638029-36642434 Medicago truncatula
Medtr1g082420 2.0kb downstream 2.0kb downstream 2000 false chr1: 36638029-36640028 Medicago truncatula
Medtr1g082420 5.0kb upstream 5.0kb upstream 7406 true chr1: 36640029-36647434 Medicago truncatula
Medtr1g082420 5.0kb upstream 5.0kb upstream 5000 false chr1: 36642435-36647434 Medicago truncatula
Medtr1g082420 5.0kb downstream 5.0kb downstream 7406 true chr1: 36635029-36642434 Medicago truncatula
Medtr1g082420 5.0kb downstream 5.0kb downstream 5000 false chr1: 36635029-36640028 Medicago truncatula
Medtr1g082420 10.0kb upstream 10.0kb upstream 12406 true chr1: 36640029-36652434 Medicago truncatula
Medtr1g082420 10.0kb upstream 10.0kb upstream 10000 false chr1: 36642435-36652434 Medicago truncatula
Medtr1g082420 10.0kb downstream 10.0kb downstream 12406 true chr1: 36630029-36642434 Medicago truncatula
Medtr1g082420 10.0kb downstream 10.0kb downstream 10000 false chr1: 36630029-36640028 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300908 5265 Fabidae View MSA
124061871 5270 Rosid View MSA
123737495 5271 Pentapetalae View MSA
122787639 5272 Eudicot View MSA
122046154 5273 Angiosperm View MSA
121349050 5274 Embryophyte View MSA
123424307 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.136       Low
cufflinks 110.707     High High
cufflinks 86.734     High High
cufflinks 0.242        
cufflinks 74.419     High  
cufflinks 0.252        
cufflinks 0.274        
cufflinks 108.146     High High
cufflinks 0.316        

0 Strain