Gene : Medtr1g012990 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13634 - RIBOSOME BIOGENESIS PROTEIN BRIX Description:  ribosomal RNA processing brix domain protein
Genomic Order:  358 Name:  ? Medtr1g012990
Secondary Identifier:  ? PAC:31097183
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g012990 0.5kb upstream 0.5kb upstream 5233 true chr1: 2776929-2782161 Medicago truncatula
Medtr1g012990 0.5kb upstream 0.5kb upstream 500 false chr1: 2776929-2777428 Medicago truncatula
Medtr1g012990 0.5kb downstream 0.5kb downstream 5233 true chr1: 2777429-2782661 Medicago truncatula
Medtr1g012990 0.5kb downstream 0.5kb downstream 500 false chr1: 2782162-2782661 Medicago truncatula
Medtr1g012990 1.0kb upstream 1.0kb upstream 5733 true chr1: 2776429-2782161 Medicago truncatula
Medtr1g012990 1.0kb upstream 1.0kb upstream 1000 false chr1: 2776429-2777428 Medicago truncatula
Medtr1g012990 1.0kb downstream 1.0kb downstream 5733 true chr1: 2777429-2783161 Medicago truncatula
Medtr1g012990 1.0kb downstream 1.0kb downstream 1000 false chr1: 2782162-2783161 Medicago truncatula
Medtr1g012990 2.0kb upstream 2.0kb upstream 6733 true chr1: 2775429-2782161 Medicago truncatula
Medtr1g012990 2.0kb upstream 2.0kb upstream 2000 false chr1: 2775429-2777428 Medicago truncatula
Medtr1g012990 2.0kb downstream 2.0kb downstream 6733 true chr1: 2777429-2784161 Medicago truncatula
Medtr1g012990 2.0kb downstream 2.0kb downstream 2000 false chr1: 2782162-2784161 Medicago truncatula
Medtr1g012990 5.0kb upstream 5.0kb upstream 9733 true chr1: 2772429-2782161 Medicago truncatula
Medtr1g012990 5.0kb upstream 5.0kb upstream 5000 false chr1: 2772429-2777428 Medicago truncatula
Medtr1g012990 5.0kb downstream 5.0kb downstream 9733 true chr1: 2777429-2787161 Medicago truncatula
Medtr1g012990 5.0kb downstream 5.0kb downstream 5000 false chr1: 2782162-2787161 Medicago truncatula
Medtr1g012990 10.0kb upstream 10.0kb upstream 14733 true chr1: 2767429-2782161 Medicago truncatula
Medtr1g012990 10.0kb upstream 10.0kb upstream 10000 false chr1: 2767429-2777428 Medicago truncatula
Medtr1g012990 10.0kb downstream 10.0kb downstream 14733 true chr1: 2777429-2792161 Medicago truncatula
Medtr1g012990 10.0kb downstream 10.0kb downstream 10000 false chr1: 2782162-2792161 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301161 5265 Fabidae View MSA
124066566 5270 Rosid View MSA
123743226 5271 Pentapetalae View MSA
122791953 5272 Eudicot View MSA
122044943 5273 Angiosperm View MSA
121349152 5274 Embryophyte View MSA
123424371 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.299        
cufflinks 2.709       Low
cufflinks 5.482        
cufflinks 6.33       High
cufflinks 5.48        
cufflinks 2.475       Low
cufflinks 4.361        
cufflinks 4.43        
cufflinks 4.702        

0 Strain