Gene : Cucsa.197020 C. sativus v1.0
Defline:  (1 of 2) PTHR11558//PTHR11558:SF28 - SPERMIDINE/SPERMINE SYNTHASE Genomic Order:  81
Name:  ? Cucsa.197020 Secondary Identifier:  ? PAC:16968353
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus BSUBPOLYAMSYN-PWY Cucumis sativus pathologic  
Csativus POLYAMINSYN3-PWY Cucumis sativus pathologic  
Csativus PWY-7528 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.197020 0.5kb upstream 0.5kb upstream 4596 true scaffold01357: 559008-563603 Cucumis sativus
Cucsa.197020 0.5kb upstream 0.5kb upstream 500 false scaffold01357: 559008-559507 Cucumis sativus
Cucsa.197020 0.5kb downstream 0.5kb downstream 4596 true scaffold01357: 559508-564103 Cucumis sativus
Cucsa.197020 0.5kb downstream 0.5kb downstream 500 false scaffold01357: 563604-564103 Cucumis sativus
Cucsa.197020 1.0kb upstream 1.0kb upstream 5096 true scaffold01357: 558508-563603 Cucumis sativus
Cucsa.197020 1.0kb upstream 1.0kb upstream 1000 false scaffold01357: 558508-559507 Cucumis sativus
Cucsa.197020 1.0kb downstream 1.0kb downstream 5096 true scaffold01357: 559508-564603 Cucumis sativus
Cucsa.197020 1.0kb downstream 1.0kb downstream 1000 false scaffold01357: 563604-564603 Cucumis sativus
Cucsa.197020 2.0kb upstream 2.0kb upstream 6096 true scaffold01357: 557508-563603 Cucumis sativus
Cucsa.197020 2.0kb upstream 2.0kb upstream 2000 false scaffold01357: 557508-559507 Cucumis sativus
Cucsa.197020 2.0kb downstream 2.0kb downstream 6096 true scaffold01357: 559508-565603 Cucumis sativus
Cucsa.197020 2.0kb downstream 2.0kb downstream 2000 false scaffold01357: 563604-565603 Cucumis sativus
Cucsa.197020 5.0kb upstream 5.0kb upstream 9096 true scaffold01357: 554508-563603 Cucumis sativus
Cucsa.197020 5.0kb upstream 5.0kb upstream 5000 false scaffold01357: 554508-559507 Cucumis sativus
Cucsa.197020 5.0kb downstream 5.0kb downstream 9096 true scaffold01357: 559508-568603 Cucumis sativus
Cucsa.197020 5.0kb downstream 5.0kb downstream 5000 false scaffold01357: 563604-568603 Cucumis sativus
Cucsa.197020 10.0kb upstream 10.0kb upstream 14096 true scaffold01357: 549508-563603 Cucumis sativus
Cucsa.197020 10.0kb upstream 10.0kb upstream 10000 false scaffold01357: 549508-559507 Cucumis sativus
Cucsa.197020 10.0kb downstream 10.0kb downstream 14096 true scaffold01357: 559508-573603 Cucumis sativus
Cucsa.197020 10.0kb downstream 10.0kb downstream 10000 false scaffold01357: 563604-573603 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121665530 5273 Angiosperm View MSA
122310686 5265 Fabidae View MSA
124050915 5270 Rosid View MSA
123619935 5271 Pentapetalae View MSA
122654361 5272 Eudicot View MSA
120937496 5274 Embryophyte View MSA
122977981 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain