Gene : VSP4 C. reinhardtii v5.6
Primary Identifier:  ? Cre09.g391801 Defline:  (1 of 7) PTHR11339//PTHR11339:SF290 - EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED // PROTEIN T26A8.1
Genomic Order:  605 Name:  ? Cre09.g391801
Secondary Identifier:  ? PAC:30780464
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre09.g391801 0.5kb upstream 0.5kb upstream 5935 true chromosome_9: 3826940-3832874 Chlamydomonas reinhardtii
Cre09.g391801 0.5kb upstream 0.5kb upstream 500 false chromosome_9: 3826940-3827439 Chlamydomonas reinhardtii
Cre09.g391801 0.5kb downstream 0.5kb downstream 5935 true chromosome_9: 3827440-3833374 Chlamydomonas reinhardtii
Cre09.g391801 0.5kb downstream 0.5kb downstream 500 false chromosome_9: 3832875-3833374 Chlamydomonas reinhardtii
Cre09.g391801 1.0kb upstream 1.0kb upstream 6435 true chromosome_9: 3826440-3832874 Chlamydomonas reinhardtii
Cre09.g391801 1.0kb upstream 1.0kb upstream 1000 false chromosome_9: 3826440-3827439 Chlamydomonas reinhardtii
Cre09.g391801 1.0kb downstream 1.0kb downstream 6435 true chromosome_9: 3827440-3833874 Chlamydomonas reinhardtii
Cre09.g391801 1.0kb downstream 1.0kb downstream 1000 false chromosome_9: 3832875-3833874 Chlamydomonas reinhardtii
Cre09.g391801 2.0kb upstream 2.0kb upstream 7435 true chromosome_9: 3825440-3832874 Chlamydomonas reinhardtii
Cre09.g391801 2.0kb upstream 2.0kb upstream 2000 false chromosome_9: 3825440-3827439 Chlamydomonas reinhardtii
Cre09.g391801 2.0kb downstream 2.0kb downstream 7435 true chromosome_9: 3827440-3834874 Chlamydomonas reinhardtii
Cre09.g391801 2.0kb downstream 2.0kb downstream 2000 false chromosome_9: 3832875-3834874 Chlamydomonas reinhardtii
Cre09.g391801 5.0kb upstream 5.0kb upstream 10435 true chromosome_9: 3822440-3832874 Chlamydomonas reinhardtii
Cre09.g391801 5.0kb upstream 5.0kb upstream 5000 false chromosome_9: 3822440-3827439 Chlamydomonas reinhardtii
Cre09.g391801 5.0kb downstream 5.0kb downstream 10435 true chromosome_9: 3827440-3837874 Chlamydomonas reinhardtii
Cre09.g391801 5.0kb downstream 5.0kb downstream 5000 false chromosome_9: 3832875-3837874 Chlamydomonas reinhardtii
Cre09.g391801 10.0kb upstream 10.0kb upstream 15435 true chromosome_9: 3817440-3832874 Chlamydomonas reinhardtii
Cre09.g391801 10.0kb upstream 10.0kb upstream 10000 false chromosome_9: 3817440-3827439 Chlamydomonas reinhardtii
Cre09.g391801 10.0kb downstream 10.0kb downstream 15435 true chromosome_9: 3827440-3842874 Chlamydomonas reinhardtii
Cre09.g391801 10.0kb downstream 10.0kb downstream 10000 false chromosome_9: 3832875-3842874 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124081432 5260 Chlorophyte View MSA
123399162 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.939     High  
cufflinks 28.404     High  
cufflinks 159.98     High High
cufflinks 180.046     High High
cufflinks 21.521     High  
cufflinks 23.437     High  
cufflinks 18.463     High  
cufflinks 44.83     High  
cufflinks 47.349     High  
cufflinks 11.738     High Low
cufflinks 331.902     High High
cufflinks 79.179     High  
cufflinks 15.678     High  
cufflinks 42.849     High  
cufflinks 90.556     High  
cufflinks 35.04     High  
cufflinks 59.894     High  
cufflinks 107.027     High  
cufflinks 1.397       Low
cufflinks 32.076     High  
cufflinks 102.543     High  
cufflinks 46.962     High  
cufflinks 13.767     High Low
cufflinks 95.125     High  
cufflinks 45.018     High  
cufflinks 75.6785 0.0 155.246 High Low
cufflinks 32.6219 7.7683 57.4754 High Low
cufflinks 59.8904 0.0 125.076 High  
cufflinks 40.0469 0.0 81.6427 High Low
cufflinks 85.4525 1.14143 169.764 High Low

0 Strain