Gene : LHCBM6 C. reinhardtii v5.6
Primary Identifier:  ? Cre06.g285250 Defline:  (1 of 6) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1)
Genomic Order:  1018 Name:  ? Cre06.g285250
Secondary Identifier:  ? PAC:30779463
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PHOTOALL-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-101 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-7731 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g285250 0.5kb upstream 0.5kb upstream 3087 true chromosome_6: 5547656-5550742 Chlamydomonas reinhardtii
Cre06.g285250 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 5547656-5548155 Chlamydomonas reinhardtii
Cre06.g285250 0.5kb downstream 0.5kb downstream 3087 true chromosome_6: 5548156-5551242 Chlamydomonas reinhardtii
Cre06.g285250 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 5550743-5551242 Chlamydomonas reinhardtii
Cre06.g285250 1.0kb upstream 1.0kb upstream 3587 true chromosome_6: 5547156-5550742 Chlamydomonas reinhardtii
Cre06.g285250 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 5547156-5548155 Chlamydomonas reinhardtii
Cre06.g285250 1.0kb downstream 1.0kb downstream 3587 true chromosome_6: 5548156-5551742 Chlamydomonas reinhardtii
Cre06.g285250 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 5550743-5551742 Chlamydomonas reinhardtii
Cre06.g285250 2.0kb upstream 2.0kb upstream 4587 true chromosome_6: 5546156-5550742 Chlamydomonas reinhardtii
Cre06.g285250 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 5546156-5548155 Chlamydomonas reinhardtii
Cre06.g285250 2.0kb downstream 2.0kb downstream 4587 true chromosome_6: 5548156-5552742 Chlamydomonas reinhardtii
Cre06.g285250 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 5550743-5552742 Chlamydomonas reinhardtii
Cre06.g285250 5.0kb upstream 5.0kb upstream 7587 true chromosome_6: 5543156-5550742 Chlamydomonas reinhardtii
Cre06.g285250 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 5543156-5548155 Chlamydomonas reinhardtii
Cre06.g285250 5.0kb downstream 5.0kb downstream 7587 true chromosome_6: 5548156-5555742 Chlamydomonas reinhardtii
Cre06.g285250 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 5550743-5555742 Chlamydomonas reinhardtii
Cre06.g285250 10.0kb upstream 10.0kb upstream 12587 true chromosome_6: 5538156-5550742 Chlamydomonas reinhardtii
Cre06.g285250 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 5538156-5548155 Chlamydomonas reinhardtii
Cre06.g285250 10.0kb downstream 10.0kb downstream 12587 true chromosome_6: 5548156-5560742 Chlamydomonas reinhardtii
Cre06.g285250 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 5550743-5560742 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124113612 5260 Chlorophyte View MSA
123426313 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4955.89     High  
cufflinks 3989.08     High  
cufflinks 2465.51     High  
cufflinks 2524.44     High  
cufflinks 4101.77     High  
cufflinks 4065.02     High  
cufflinks 1945.07     High  
cufflinks 3416.15     High  
cufflinks 5182.05     High  
cufflinks 2655.36     High  
cufflinks 1479.77     High  
cufflinks 3641.54     High  
cufflinks 3165.38     High  
cufflinks 3356.72     High  
cufflinks 3809.83     High  
cufflinks 5016.91     High  
cufflinks 4229.77     High  
cufflinks 3360.08     High  
cufflinks 674.355     High Low
cufflinks 493.523     High Low
cufflinks 3658.28     High  
cufflinks 5295.24     High  
cufflinks 688.051     High Low
cufflinks 2132.18     High  
cufflinks 5081.32     High  
cufflinks 653.561 50.7388 1256.38 High  
cufflinks 2956.66 59.4533 5853.87 High  
cufflinks 2328.7 0.0 4979.17 High  
cufflinks 805.287 86.2476 1524.33 High  
cufflinks 2729.5 333.716 5125.28 High  

0 Strain