Gene : RCD1 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g540400 Defline:  (1 of 2) K12606 - CCR4-NOT transcription complex subunit 9 (RCD1, CNOT9, CAF40)
Genomic Order:  1723 Name:  ? Cre12.g540400
Secondary Identifier:  ? PAC:30793202
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g540400 0.5kb upstream 0.5kb upstream 4104 true chromosome_12: 9365075-9369178 Chlamydomonas reinhardtii
Cre12.g540400 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 9365075-9365574 Chlamydomonas reinhardtii
Cre12.g540400 0.5kb downstream 0.5kb downstream 4104 true chromosome_12: 9365575-9369678 Chlamydomonas reinhardtii
Cre12.g540400 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 9369179-9369678 Chlamydomonas reinhardtii
Cre12.g540400 1.0kb upstream 1.0kb upstream 4604 true chromosome_12: 9364575-9369178 Chlamydomonas reinhardtii
Cre12.g540400 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 9364575-9365574 Chlamydomonas reinhardtii
Cre12.g540400 1.0kb downstream 1.0kb downstream 4604 true chromosome_12: 9365575-9370178 Chlamydomonas reinhardtii
Cre12.g540400 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 9369179-9370178 Chlamydomonas reinhardtii
Cre12.g540400 2.0kb upstream 2.0kb upstream 5604 true chromosome_12: 9363575-9369178 Chlamydomonas reinhardtii
Cre12.g540400 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 9363575-9365574 Chlamydomonas reinhardtii
Cre12.g540400 2.0kb downstream 2.0kb downstream 5604 true chromosome_12: 9365575-9371178 Chlamydomonas reinhardtii
Cre12.g540400 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 9369179-9371178 Chlamydomonas reinhardtii
Cre12.g540400 5.0kb upstream 5.0kb upstream 8604 true chromosome_12: 9360575-9369178 Chlamydomonas reinhardtii
Cre12.g540400 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 9360575-9365574 Chlamydomonas reinhardtii
Cre12.g540400 5.0kb downstream 5.0kb downstream 8604 true chromosome_12: 9365575-9374178 Chlamydomonas reinhardtii
Cre12.g540400 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 9369179-9374178 Chlamydomonas reinhardtii
Cre12.g540400 10.0kb upstream 10.0kb upstream 13604 true chromosome_12: 9355575-9369178 Chlamydomonas reinhardtii
Cre12.g540400 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 9355575-9365574 Chlamydomonas reinhardtii
Cre12.g540400 10.0kb downstream 10.0kb downstream 13604 true chromosome_12: 9365575-9379178 Chlamydomonas reinhardtii
Cre12.g540400 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 9369179-9379178 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110204 5260 Chlorophyte View MSA
123424774 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.035     High  
cufflinks 12.652        
cufflinks 11.22        
cufflinks 11.239        
cufflinks 11.132        
cufflinks 11.707        
cufflinks 13.442       High
cufflinks 13.734       High
cufflinks 11.809     High  
cufflinks 4.68       Low
cufflinks 8.292        
cufflinks 10.901        
cufflinks 8.635        
cufflinks 10.792        
cufflinks 9.362        
cufflinks 10.424        
cufflinks 11.31        
cufflinks 9.666        
cufflinks 6.145     High Low
cufflinks 12.142        
cufflinks 9.47        
cufflinks 11.721     High  
cufflinks 10.183        
cufflinks 11.416        
cufflinks 13.499     High High
cufflinks 33.5734 1.83788 65.3089 High  
cufflinks 25.5132 6.9681 44.0584    
cufflinks 27.9201 0.0 56.1946 High  
cufflinks 21.181 2.11618 40.2459   Low
cufflinks 21.8286 4.13788 39.5192    

0 Strain