Gene : Cre12.g510350 C. reinhardtii v5.6
Defline:  (1 of 1) KOG0487 - Transcription factor Abd-B, contains HOX domain Genomic Order:  333
Name:  ? Cre12.g510350 Secondary Identifier:  ? PAC:30792567
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g510350 0.5kb upstream 0.5kb upstream 33896 true chromosome_12: 1958105-1992000 Chlamydomonas reinhardtii
Cre12.g510350 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 1991501-1992000 Chlamydomonas reinhardtii
Cre12.g510350 0.5kb downstream 0.5kb downstream 33896 true chromosome_12: 1957605-1991500 Chlamydomonas reinhardtii
Cre12.g510350 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 1957605-1958104 Chlamydomonas reinhardtii
Cre12.g510350 1.0kb upstream 1.0kb upstream 34396 true chromosome_12: 1958105-1992500 Chlamydomonas reinhardtii
Cre12.g510350 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 1991501-1992500 Chlamydomonas reinhardtii
Cre12.g510350 1.0kb downstream 1.0kb downstream 34396 true chromosome_12: 1957105-1991500 Chlamydomonas reinhardtii
Cre12.g510350 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 1957105-1958104 Chlamydomonas reinhardtii
Cre12.g510350 2.0kb upstream 2.0kb upstream 35396 true chromosome_12: 1958105-1993500 Chlamydomonas reinhardtii
Cre12.g510350 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 1991501-1993500 Chlamydomonas reinhardtii
Cre12.g510350 2.0kb downstream 2.0kb downstream 35396 true chromosome_12: 1956105-1991500 Chlamydomonas reinhardtii
Cre12.g510350 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 1956105-1958104 Chlamydomonas reinhardtii
Cre12.g510350 5.0kb upstream 5.0kb upstream 38396 true chromosome_12: 1958105-1996500 Chlamydomonas reinhardtii
Cre12.g510350 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 1991501-1996500 Chlamydomonas reinhardtii
Cre12.g510350 5.0kb downstream 5.0kb downstream 38396 true chromosome_12: 1953105-1991500 Chlamydomonas reinhardtii
Cre12.g510350 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 1953105-1958104 Chlamydomonas reinhardtii
Cre12.g510350 10.0kb upstream 10.0kb upstream 43396 true chromosome_12: 1958105-2001500 Chlamydomonas reinhardtii
Cre12.g510350 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 1991501-2001500 Chlamydomonas reinhardtii
Cre12.g510350 10.0kb downstream 10.0kb downstream 43396 true chromosome_12: 1948105-1991500 Chlamydomonas reinhardtii
Cre12.g510350 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 1948105-1958104 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124081160 5260 Chlorophyte Singleton cluster - no MSA
123398906 5275 Viridiplantae Singleton cluster - no MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.035     Low  
cufflinks 0.079     Low High
cufflinks 0.041     Low  
cufflinks 0.03     Low  
cufflinks 0.099     Low High
cufflinks 0.038     Low  
cufflinks 0.029     Low  
cufflinks 0.039     Low  
cufflinks 0.042     Low  
cufflinks 0.012     Low Low
cufflinks 0.057     Low  
cufflinks 0.04     Low  
cufflinks 0.019     Low  
cufflinks 0.016     Low  
cufflinks 0.078     Low High
cufflinks 0.015     Low Low
cufflinks 0.066     Low  
cufflinks 0.045     Low  
cufflinks 0.01     Low Low
cufflinks 0.003     Low Low
cufflinks 0.044     Low  
cufflinks 0.083     Low High
cufflinks 0.026     Low  
cufflinks 0.064     Low  
cufflinks 0.088     Low High
cufflinks 0.0693592 0.0 0.145672 Low  
cufflinks 0.107855 0.0 0.253093 Low  
cufflinks 0.495793 0.0 1.05796   High
cufflinks 0.126062 0.0 0.253971 Low  
cufflinks 0.46799 0.0633204 0.87266   High

0 Strain