Gene : Cucsa.031240.1 C. sativus v1.0
Defline:  (1 of 2) PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) Genomic Order:  7
Name:  ? Cucsa.031240.1 Secondary Identifier:  ? PAC:16952269
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.031240.1 0.5kb upstream 0.5kb upstream 5697 true scaffold00429: 133878-139574 Cucumis sativus
Cucsa.031240.1 0.5kb upstream 0.5kb upstream 500 false scaffold00429: 139075-139574 Cucumis sativus
Cucsa.031240.1 0.5kb downstream 0.5kb downstream 5697 true scaffold00429: 133378-139074 Cucumis sativus
Cucsa.031240.1 0.5kb downstream 0.5kb downstream 500 false scaffold00429: 133378-133877 Cucumis sativus
Cucsa.031240.1 1.0kb upstream 1.0kb upstream 6197 true scaffold00429: 133878-140074 Cucumis sativus
Cucsa.031240.1 1.0kb upstream 1.0kb upstream 1000 false scaffold00429: 139075-140074 Cucumis sativus
Cucsa.031240.1 1.0kb downstream 1.0kb downstream 6197 true scaffold00429: 132878-139074 Cucumis sativus
Cucsa.031240.1 1.0kb downstream 1.0kb downstream 1000 false scaffold00429: 132878-133877 Cucumis sativus
Cucsa.031240.1 2.0kb upstream 2.0kb upstream 7197 true scaffold00429: 133878-141074 Cucumis sativus
Cucsa.031240.1 2.0kb upstream 2.0kb upstream 2000 false scaffold00429: 139075-141074 Cucumis sativus
Cucsa.031240.1 2.0kb downstream 2.0kb downstream 7197 true scaffold00429: 131878-139074 Cucumis sativus
Cucsa.031240.1 2.0kb downstream 2.0kb downstream 2000 false scaffold00429: 131878-133877 Cucumis sativus
Cucsa.031240.1 5.0kb upstream 5.0kb upstream 10197 true scaffold00429: 133878-144074 Cucumis sativus
Cucsa.031240.1 5.0kb upstream 5.0kb upstream 5000 false scaffold00429: 139075-144074 Cucumis sativus
Cucsa.031240.1 5.0kb downstream 5.0kb downstream 10197 true scaffold00429: 128878-139074 Cucumis sativus
Cucsa.031240.1 5.0kb downstream 5.0kb downstream 5000 false scaffold00429: 128878-133877 Cucumis sativus
Cucsa.031240.1 10.0kb upstream 10.0kb upstream 15197 true scaffold00429: 133878-149074 Cucumis sativus
Cucsa.031240.1 10.0kb upstream 10.0kb upstream 10000 false scaffold00429: 139075-149074 Cucumis sativus
Cucsa.031240.1 10.0kb downstream 10.0kb downstream 15197 true scaffold00429: 123878-139074 Cucumis sativus
Cucsa.031240.1 10.0kb downstream 10.0kb downstream 10000 false scaffold00429: 123878-133877 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122237441 5265 Fabidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain