Gene : Brara.C04007 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR24096:SF219 - LONG CHAIN ACYL-COA SYNTHETASE 8 Genomic Order:  4007
Name:  ? Brara.C04007 Secondary Identifier:  ? PAC:30615571
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Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1121 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-321 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5136 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5143 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5147 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5156 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5885 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5971 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5989 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-389 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6733 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6803 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C04007 0.5kb upstream 0.5kb upstream 4042 true A03: 20921567-20925608 Brassica rapa FPsc
Brara.C04007 0.5kb upstream 0.5kb upstream 500 false A03: 20921567-20922066 Brassica rapa FPsc
Brara.C04007 0.5kb downstream 0.5kb downstream 4042 true A03: 20922067-20926108 Brassica rapa FPsc
Brara.C04007 0.5kb downstream 0.5kb downstream 500 false A03: 20925609-20926108 Brassica rapa FPsc
Brara.C04007 1.0kb upstream 1.0kb upstream 4542 true A03: 20921067-20925608 Brassica rapa FPsc
Brara.C04007 1.0kb upstream 1.0kb upstream 1000 false A03: 20921067-20922066 Brassica rapa FPsc
Brara.C04007 1.0kb downstream 1.0kb downstream 4542 true A03: 20922067-20926608 Brassica rapa FPsc
Brara.C04007 1.0kb downstream 1.0kb downstream 1000 false A03: 20925609-20926608 Brassica rapa FPsc
Brara.C04007 2.0kb upstream 2.0kb upstream 5542 true A03: 20920067-20925608 Brassica rapa FPsc
Brara.C04007 2.0kb upstream 2.0kb upstream 2000 false A03: 20920067-20922066 Brassica rapa FPsc
Brara.C04007 2.0kb downstream 2.0kb downstream 5542 true A03: 20922067-20927608 Brassica rapa FPsc
Brara.C04007 2.0kb downstream 2.0kb downstream 2000 false A03: 20925609-20927608 Brassica rapa FPsc
Brara.C04007 5.0kb upstream 5.0kb upstream 8542 true A03: 20917067-20925608 Brassica rapa FPsc
Brara.C04007 5.0kb upstream 5.0kb upstream 5000 false A03: 20917067-20922066 Brassica rapa FPsc
Brara.C04007 5.0kb downstream 5.0kb downstream 8542 true A03: 20922067-20930608 Brassica rapa FPsc
Brara.C04007 5.0kb downstream 5.0kb downstream 5000 false A03: 20925609-20930608 Brassica rapa FPsc
Brara.C04007 10.0kb upstream 10.0kb upstream 13542 true A03: 20912067-20925608 Brassica rapa FPsc
Brara.C04007 10.0kb upstream 10.0kb upstream 10000 false A03: 20912067-20922066 Brassica rapa FPsc
Brara.C04007 10.0kb downstream 10.0kb downstream 13542 true A03: 20922067-20935608 Brassica rapa FPsc
Brara.C04007 10.0kb downstream 10.0kb downstream 10000 false A03: 20925609-20935608 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362649 5261 Brassicaceae View MSA
123830994 5264 Brassicales-Malvales View MSA
124343221 5266 SBM View MSA
124243031 5268 Malvidae View MSA
124066498 5270 Rosid View MSA
123736490 5271 Pentapetalae View MSA
122788185 5272 Eudicot View MSA
122046932 5273 Angiosperm View MSA
121348478 5274 Embryophyte View MSA
123380877 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier