Gene : Brara.K00563 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR11863:SF33 - LATHOSTEROL OXIDASE Genomic Order:  1
Name:  ? Brara.K00563 Secondary Identifier:  ? PAC:30606603
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2541 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00563 0.5kb upstream 0.5kb upstream 1732 true Scaffold21968: 101-1832 Brassica rapa FPsc
Brara.K00563 0.5kb upstream 0.5kb upstream 500 false Scaffold21968: 101-600 Brassica rapa FPsc
Brara.K00563 0.5kb downstream 0.5kb downstream 1732 true Scaffold21968: 601-2332 Brassica rapa FPsc
Brara.K00563 0.5kb downstream 0.5kb downstream 500 false Scaffold21968: 1833-2332 Brassica rapa FPsc
Brara.K00563 1.0kb upstream 1.0kb upstream 1832 true Scaffold21968: 1-1832 Brassica rapa FPsc
Brara.K00563 1.0kb upstream 1.0kb upstream 600 false Scaffold21968: 1-600 Brassica rapa FPsc
Brara.K00563 1.0kb downstream 1.0kb downstream 1827 true Scaffold21968: 601-2427 Brassica rapa FPsc
Brara.K00563 1.0kb downstream 1.0kb downstream 595 false Scaffold21968: 1833-2427 Brassica rapa FPsc
Brara.K00563 2.0kb upstream 2.0kb upstream 1832 true Scaffold21968: 1-1832 Brassica rapa FPsc
Brara.K00563 2.0kb upstream 2.0kb upstream 600 false Scaffold21968: 1-600 Brassica rapa FPsc
Brara.K00563 2.0kb downstream 2.0kb downstream 1827 true Scaffold21968: 601-2427 Brassica rapa FPsc
Brara.K00563 2.0kb downstream 2.0kb downstream 595 false Scaffold21968: 1833-2427 Brassica rapa FPsc
Brara.K00563 5.0kb upstream 5.0kb upstream 1832 true Scaffold21968: 1-1832 Brassica rapa FPsc
Brara.K00563 5.0kb upstream 5.0kb upstream 600 false Scaffold21968: 1-600 Brassica rapa FPsc
Brara.K00563 5.0kb downstream 5.0kb downstream 1827 true Scaffold21968: 601-2427 Brassica rapa FPsc
Brara.K00563 5.0kb downstream 5.0kb downstream 595 false Scaffold21968: 1833-2427 Brassica rapa FPsc
Brara.K00563 10.0kb upstream 10.0kb upstream 1832 true Scaffold21968: 1-1832 Brassica rapa FPsc
Brara.K00563 10.0kb upstream 10.0kb upstream 600 false Scaffold21968: 1-600 Brassica rapa FPsc
Brara.K00563 10.0kb downstream 10.0kb downstream 1827 true Scaffold21968: 601-2427 Brassica rapa FPsc
Brara.K00563 10.0kb downstream 10.0kb downstream 595 false Scaffold21968: 1833-2427 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121512031 5273 Angiosperm View MSA
122380097 5261 Brassicaceae View MSA
123802558 5264 Brassicales-Malvales View MSA
124299745 5266 SBM View MSA
124151074 5268 Malvidae View MSA
123876583 5270 Rosid View MSA
123460240 5271 Pentapetalae View MSA
122495617 5272 Eudicot View MSA
120785057 5274 Embryophyte View MSA
123426408 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier