Gene : Brara.I01025 B. rapa FPsc v1.3
Defline:  (1 of 1) PF00070//PF14303 - Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox) // No apical meristem-associated C-terminal domain (NAM-associated) Genomic Order:  1025
Name:  ? Brara.I01025 Secondary Identifier:  ? PAC:30641506
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc THIOREDOX-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I01025 0.5kb upstream 0.5kb upstream 3460 true A09: 5763962-5767421 Brassica rapa FPsc
Brara.I01025 0.5kb upstream 0.5kb upstream 500 false A09: 5763962-5764461 Brassica rapa FPsc
Brara.I01025 0.5kb downstream 0.5kb downstream 3460 true A09: 5764462-5767921 Brassica rapa FPsc
Brara.I01025 0.5kb downstream 0.5kb downstream 500 false A09: 5767422-5767921 Brassica rapa FPsc
Brara.I01025 1.0kb upstream 1.0kb upstream 3960 true A09: 5763462-5767421 Brassica rapa FPsc
Brara.I01025 1.0kb upstream 1.0kb upstream 1000 false A09: 5763462-5764461 Brassica rapa FPsc
Brara.I01025 1.0kb downstream 1.0kb downstream 3960 true A09: 5764462-5768421 Brassica rapa FPsc
Brara.I01025 1.0kb downstream 1.0kb downstream 1000 false A09: 5767422-5768421 Brassica rapa FPsc
Brara.I01025 2.0kb upstream 2.0kb upstream 4960 true A09: 5762462-5767421 Brassica rapa FPsc
Brara.I01025 2.0kb upstream 2.0kb upstream 2000 false A09: 5762462-5764461 Brassica rapa FPsc
Brara.I01025 2.0kb downstream 2.0kb downstream 4960 true A09: 5764462-5769421 Brassica rapa FPsc
Brara.I01025 2.0kb downstream 2.0kb downstream 2000 false A09: 5767422-5769421 Brassica rapa FPsc
Brara.I01025 5.0kb upstream 5.0kb upstream 7960 true A09: 5759462-5767421 Brassica rapa FPsc
Brara.I01025 5.0kb upstream 5.0kb upstream 5000 false A09: 5759462-5764461 Brassica rapa FPsc
Brara.I01025 5.0kb downstream 5.0kb downstream 7960 true A09: 5764462-5772421 Brassica rapa FPsc
Brara.I01025 5.0kb downstream 5.0kb downstream 5000 false A09: 5767422-5772421 Brassica rapa FPsc
Brara.I01025 10.0kb upstream 10.0kb upstream 12960 true A09: 5754462-5767421 Brassica rapa FPsc
Brara.I01025 10.0kb upstream 10.0kb upstream 10000 false A09: 5754462-5764461 Brassica rapa FPsc
Brara.I01025 10.0kb downstream 10.0kb downstream 12960 true A09: 5764462-5777421 Brassica rapa FPsc
Brara.I01025 10.0kb downstream 10.0kb downstream 10000 false A09: 5767422-5777421 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121506786 5273 Angiosperm Singleton cluster - no MSA
122353437 5261 Brassicaceae Singleton cluster - no MSA
123792020 5264 Brassicales-Malvales Singleton cluster - no MSA
124289912 5266 SBM Singleton cluster - no MSA
124143154 5268 Malvidae Singleton cluster - no MSA
123869909 5270 Rosid Singleton cluster - no MSA
123454399 5271 Pentapetalae Singleton cluster - no MSA
122489847 5272 Eudicot Singleton cluster - no MSA
120779967 5274 Embryophyte Singleton cluster - no MSA
123426423 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier