Gene : Brara.B00322 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11540:SF21 - MALATE DEHYDROGENASE, GLYOXYSOMAL Genomic Order:  322
Name:  ? Brara.B00322 Secondary Identifier:  ? PAC:30606846
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLYOXYLATE-BYPASS Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7115 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00322 0.5kb upstream 0.5kb upstream 2752 true A02: 1504002-1506753 Brassica rapa FPsc
Brara.B00322 0.5kb upstream 0.5kb upstream 500 false A02: 1506254-1506753 Brassica rapa FPsc
Brara.B00322 0.5kb downstream 0.5kb downstream 2752 true A02: 1503502-1506253 Brassica rapa FPsc
Brara.B00322 0.5kb downstream 0.5kb downstream 500 false A02: 1503502-1504001 Brassica rapa FPsc
Brara.B00322 1.0kb upstream 1.0kb upstream 3252 true A02: 1504002-1507253 Brassica rapa FPsc
Brara.B00322 1.0kb upstream 1.0kb upstream 1000 false A02: 1506254-1507253 Brassica rapa FPsc
Brara.B00322 1.0kb downstream 1.0kb downstream 3252 true A02: 1503002-1506253 Brassica rapa FPsc
Brara.B00322 1.0kb downstream 1.0kb downstream 1000 false A02: 1503002-1504001 Brassica rapa FPsc
Brara.B00322 2.0kb upstream 2.0kb upstream 4252 true A02: 1504002-1508253 Brassica rapa FPsc
Brara.B00322 2.0kb upstream 2.0kb upstream 2000 false A02: 1506254-1508253 Brassica rapa FPsc
Brara.B00322 2.0kb downstream 2.0kb downstream 4252 true A02: 1502002-1506253 Brassica rapa FPsc
Brara.B00322 2.0kb downstream 2.0kb downstream 2000 false A02: 1502002-1504001 Brassica rapa FPsc
Brara.B00322 5.0kb upstream 5.0kb upstream 7252 true A02: 1504002-1511253 Brassica rapa FPsc
Brara.B00322 5.0kb upstream 5.0kb upstream 5000 false A02: 1506254-1511253 Brassica rapa FPsc
Brara.B00322 5.0kb downstream 5.0kb downstream 7252 true A02: 1499002-1506253 Brassica rapa FPsc
Brara.B00322 5.0kb downstream 5.0kb downstream 5000 false A02: 1499002-1504001 Brassica rapa FPsc
Brara.B00322 10.0kb upstream 10.0kb upstream 12252 true A02: 1504002-1516253 Brassica rapa FPsc
Brara.B00322 10.0kb upstream 10.0kb upstream 10000 false A02: 1506254-1516253 Brassica rapa FPsc
Brara.B00322 10.0kb downstream 10.0kb downstream 12252 true A02: 1494002-1506253 Brassica rapa FPsc
Brara.B00322 10.0kb downstream 10.0kb downstream 10000 false A02: 1494002-1504001 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368946 5261 Brassicaceae View MSA
123839952 5264 Brassicales-Malvales View MSA
124348581 5266 SBM View MSA
124236845 5268 Malvidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier