Gene : Brara.G00143 B. rapa FPsc v1.3
Defline:  (1 of 1) 2.5.1.115 - Homogentisate phytyltransferase / HPT Genomic Order:  143
Name:  ? Brara.G00143 Secondary Identifier:  ? PAC:30634113
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1422 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G00143 0.5kb upstream 0.5kb upstream 3494 true A07: 1153868-1157361 Brassica rapa FPsc
Brara.G00143 0.5kb upstream 0.5kb upstream 500 false A07: 1153868-1154367 Brassica rapa FPsc
Brara.G00143 0.5kb downstream 0.5kb downstream 3494 true A07: 1154368-1157861 Brassica rapa FPsc
Brara.G00143 0.5kb downstream 0.5kb downstream 500 false A07: 1157362-1157861 Brassica rapa FPsc
Brara.G00143 1.0kb upstream 1.0kb upstream 3994 true A07: 1153368-1157361 Brassica rapa FPsc
Brara.G00143 1.0kb upstream 1.0kb upstream 1000 false A07: 1153368-1154367 Brassica rapa FPsc
Brara.G00143 1.0kb downstream 1.0kb downstream 3994 true A07: 1154368-1158361 Brassica rapa FPsc
Brara.G00143 1.0kb downstream 1.0kb downstream 1000 false A07: 1157362-1158361 Brassica rapa FPsc
Brara.G00143 2.0kb upstream 2.0kb upstream 4994 true A07: 1152368-1157361 Brassica rapa FPsc
Brara.G00143 2.0kb upstream 2.0kb upstream 2000 false A07: 1152368-1154367 Brassica rapa FPsc
Brara.G00143 2.0kb downstream 2.0kb downstream 4994 true A07: 1154368-1159361 Brassica rapa FPsc
Brara.G00143 2.0kb downstream 2.0kb downstream 2000 false A07: 1157362-1159361 Brassica rapa FPsc
Brara.G00143 5.0kb upstream 5.0kb upstream 7994 true A07: 1149368-1157361 Brassica rapa FPsc
Brara.G00143 5.0kb upstream 5.0kb upstream 5000 false A07: 1149368-1154367 Brassica rapa FPsc
Brara.G00143 5.0kb downstream 5.0kb downstream 7994 true A07: 1154368-1162361 Brassica rapa FPsc
Brara.G00143 5.0kb downstream 5.0kb downstream 5000 false A07: 1157362-1162361 Brassica rapa FPsc
Brara.G00143 10.0kb upstream 10.0kb upstream 12994 true A07: 1144368-1157361 Brassica rapa FPsc
Brara.G00143 10.0kb upstream 10.0kb upstream 10000 false A07: 1144368-1154367 Brassica rapa FPsc
Brara.G00143 10.0kb downstream 10.0kb downstream 12994 true A07: 1154368-1167361 Brassica rapa FPsc
Brara.G00143 10.0kb downstream 10.0kb downstream 10000 false A07: 1157362-1167361 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361831 5261 Brassicaceae View MSA
123829047 5264 Brassicales-Malvales View MSA
124346176 5266 SBM View MSA
124238838 5268 Malvidae View MSA
124061099 5270 Rosid View MSA
123745017 5271 Pentapetalae View MSA
122786578 5272 Eudicot View MSA
122051505 5273 Angiosperm View MSA
121349227 5274 Embryophyte View MSA
123426888 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier