Gene : Brara.F03501 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR10165:SF80 - LIPID PHOSPHATE PHOSPHATASE 1-RELATED Genomic Order:  3501
Name:  ? Brara.F03501 Secondary Identifier:  ? PAC:30629363
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRIGLSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F03501 0.5kb upstream 0.5kb upstream 2151 true A06: 27184830-27186980 Brassica rapa FPsc
Brara.F03501 0.5kb upstream 0.5kb upstream 500 false A06: 27184830-27185329 Brassica rapa FPsc
Brara.F03501 0.5kb downstream 0.5kb downstream 2151 true A06: 27185330-27187480 Brassica rapa FPsc
Brara.F03501 0.5kb downstream 0.5kb downstream 500 false A06: 27186981-27187480 Brassica rapa FPsc
Brara.F03501 1.0kb upstream 1.0kb upstream 2651 true A06: 27184330-27186980 Brassica rapa FPsc
Brara.F03501 1.0kb upstream 1.0kb upstream 1000 false A06: 27184330-27185329 Brassica rapa FPsc
Brara.F03501 1.0kb downstream 1.0kb downstream 2651 true A06: 27185330-27187980 Brassica rapa FPsc
Brara.F03501 1.0kb downstream 1.0kb downstream 1000 false A06: 27186981-27187980 Brassica rapa FPsc
Brara.F03501 2.0kb upstream 2.0kb upstream 3651 true A06: 27183330-27186980 Brassica rapa FPsc
Brara.F03501 2.0kb upstream 2.0kb upstream 2000 false A06: 27183330-27185329 Brassica rapa FPsc
Brara.F03501 2.0kb downstream 2.0kb downstream 3651 true A06: 27185330-27188980 Brassica rapa FPsc
Brara.F03501 2.0kb downstream 2.0kb downstream 2000 false A06: 27186981-27188980 Brassica rapa FPsc
Brara.F03501 5.0kb upstream 5.0kb upstream 6651 true A06: 27180330-27186980 Brassica rapa FPsc
Brara.F03501 5.0kb upstream 5.0kb upstream 5000 false A06: 27180330-27185329 Brassica rapa FPsc
Brara.F03501 5.0kb downstream 5.0kb downstream 6651 true A06: 27185330-27191980 Brassica rapa FPsc
Brara.F03501 5.0kb downstream 5.0kb downstream 5000 false A06: 27186981-27191980 Brassica rapa FPsc
Brara.F03501 10.0kb upstream 10.0kb upstream 11651 true A06: 27175330-27186980 Brassica rapa FPsc
Brara.F03501 10.0kb upstream 10.0kb upstream 10000 false A06: 27175330-27185329 Brassica rapa FPsc
Brara.F03501 10.0kb downstream 10.0kb downstream 11651 true A06: 27185330-27196980 Brassica rapa FPsc
Brara.F03501 10.0kb downstream 10.0kb downstream 10000 false A06: 27186981-27196980 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122350482 5261 Brassicaceae Singleton cluster - no MSA
123789501 5264 Brassicales-Malvales Singleton cluster - no MSA
124287499 5266 SBM Singleton cluster - no MSA
124255972 5268 Malvidae View MSA
124074068 5270 Rosid View MSA
123752776 5271 Pentapetalae View MSA
122787523 5272 Eudicot View MSA
122042575 5273 Angiosperm View MSA
121350600 5274 Embryophyte View MSA
123428329 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier