Gene : Glyma.20G231600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR30373:SF2 - UPF0603 PROTEIN YGCG Genomic Order:  2316
Name:  ? Glyma.20G231600 Secondary Identifier:  ? PAC:30520017
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5083 Glycine max pathologic  
Gmax PWY-6348 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G231600 0.5kb upstream 0.5kb upstream 2858 true Chr20: 46510853-46513710 Glycine max
Glyma.20G231600 0.5kb upstream 0.5kb upstream 500 false Chr20: 46513211-46513710 Glycine max
Glyma.20G231600 0.5kb downstream 0.5kb downstream 2858 true Chr20: 46510353-46513210 Glycine max
Glyma.20G231600 0.5kb downstream 0.5kb downstream 500 false Chr20: 46510353-46510852 Glycine max
Glyma.20G231600 1.0kb upstream 1.0kb upstream 3358 true Chr20: 46510853-46514210 Glycine max
Glyma.20G231600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 46513211-46514210 Glycine max
Glyma.20G231600 1.0kb downstream 1.0kb downstream 3358 true Chr20: 46509853-46513210 Glycine max
Glyma.20G231600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 46509853-46510852 Glycine max
Glyma.20G231600 2.0kb upstream 2.0kb upstream 4358 true Chr20: 46510853-46515210 Glycine max
Glyma.20G231600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 46513211-46515210 Glycine max
Glyma.20G231600 2.0kb downstream 2.0kb downstream 4358 true Chr20: 46508853-46513210 Glycine max
Glyma.20G231600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 46508853-46510852 Glycine max
Glyma.20G231600 5.0kb upstream 5.0kb upstream 7358 true Chr20: 46510853-46518210 Glycine max
Glyma.20G231600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 46513211-46518210 Glycine max
Glyma.20G231600 5.0kb downstream 5.0kb downstream 7358 true Chr20: 46505853-46513210 Glycine max
Glyma.20G231600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 46505853-46510852 Glycine max
Glyma.20G231600 10.0kb upstream 10.0kb upstream 12358 true Chr20: 46510853-46523210 Glycine max
Glyma.20G231600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 46513211-46523210 Glycine max
Glyma.20G231600 10.0kb downstream 10.0kb downstream 12358 true Chr20: 46500853-46513210 Glycine max
Glyma.20G231600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 46500853-46510852 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300908 5265 Fabidae View MSA
124061871 5270 Rosid View MSA
123737495 5271 Pentapetalae View MSA
122787639 5272 Eudicot View MSA
122046154 5273 Angiosperm View MSA
121349050 5274 Embryophyte View MSA
123424307 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.2819 0.0 100.438 High High
cufflinks 30.2452 0.0 80.9154 High High
cufflinks 4.20018 0.0 12.9318    
cufflinks 12.9232 0.0 35.1191    
cufflinks 1.8439 0.0 6.3357   Low
cufflinks 1.94851 0.0 6.65616    
cufflinks 29.8556 0.0 79.8366 High High
cufflinks 7.09044 0.0 20.3019    
cufflinks 1.15947 0.0 4.13839   Low
cufflinks 11.154     High  
cufflinks 0.039     Low Low
cufflinks 7.137        
cufflinks 0.129        
cufflinks 0.057     Low Low
cufflinks 0.161        
cufflinks 76.552     High High
cufflinks 0.046     Low Low
cufflinks 9.882     High  
cufflinks 20.451     High  
cufflinks 102.712     High High
cufflinks 0.119        
cufflinks 94.418     High High
cufflinks 47.81     High  
cufflinks 0.107        
cufflinks 90.308     High High
cufflinks 0.026     Low Low

0 Strain