Gene : Glyma.20G238000 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00169//PF00614//PF13091 - PH domain (PH) // Phospholipase D Active site motif (PLDc) // PLD-like domain (PLDc_2) Genomic Order:  2380
Name:  ? Glyma.20G238000 Secondary Identifier:  ? PAC:30522695
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax LIPASYN-PWY Glycine max pathologic  
Gmax PWY-3561 Glycine max pathologic  
Gmax PWY-7039 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G238000 0.5kb upstream 0.5kb upstream 16002 true Chr20: 46971628-46987629 Glycine max
Glyma.20G238000 0.5kb upstream 0.5kb upstream 500 false Chr20: 46971628-46972127 Glycine max
Glyma.20G238000 0.5kb downstream 0.5kb downstream 16002 true Chr20: 46972128-46988129 Glycine max
Glyma.20G238000 0.5kb downstream 0.5kb downstream 500 false Chr20: 46987630-46988129 Glycine max
Glyma.20G238000 1.0kb upstream 1.0kb upstream 16502 true Chr20: 46971128-46987629 Glycine max
Glyma.20G238000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 46971128-46972127 Glycine max
Glyma.20G238000 1.0kb downstream 1.0kb downstream 16502 true Chr20: 46972128-46988629 Glycine max
Glyma.20G238000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 46987630-46988629 Glycine max
Glyma.20G238000 2.0kb upstream 2.0kb upstream 17502 true Chr20: 46970128-46987629 Glycine max
Glyma.20G238000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 46970128-46972127 Glycine max
Glyma.20G238000 2.0kb downstream 2.0kb downstream 17502 true Chr20: 46972128-46989629 Glycine max
Glyma.20G238000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 46987630-46989629 Glycine max
Glyma.20G238000 5.0kb upstream 5.0kb upstream 20502 true Chr20: 46967128-46987629 Glycine max
Glyma.20G238000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 46967128-46972127 Glycine max
Glyma.20G238000 5.0kb downstream 5.0kb downstream 20502 true Chr20: 46972128-46992629 Glycine max
Glyma.20G238000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 46987630-46992629 Glycine max
Glyma.20G238000 10.0kb upstream 10.0kb upstream 25502 true Chr20: 46962128-46987629 Glycine max
Glyma.20G238000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 46962128-46972127 Glycine max
Glyma.20G238000 10.0kb downstream 10.0kb downstream 25502 true Chr20: 46972128-46997629 Glycine max
Glyma.20G238000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 46987630-46997629 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308908 5265 Fabidae View MSA
124061859 5270 Rosid View MSA
123744231 5271 Pentapetalae View MSA
122791930 5272 Eudicot View MSA
122042755 5273 Angiosperm View MSA
121345352 5274 Embryophyte View MSA
123380200 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.3535 0.0 17.5484    
cufflinks 0.62176 0.0 3.80539    
cufflinks 22.7051 0.0 100.144 High High
cufflinks 2.69651 0.0 11.6026    
cufflinks 0.699927 0.0 4.75316    
cufflinks 0.66224 0.0 4.43782    
cufflinks 2.36109 0.0 10.7001    
cufflinks 0.69328 0.0 4.07824    
cufflinks 1.04993 0.0 6.16001    
cufflinks 0.059     Low  
cufflinks 0.066        
cufflinks 0.91       High
cufflinks 0.05     Low  
cufflinks 0.029     Low Low
cufflinks 0.125        
cufflinks 0.048     Low  
cufflinks 0.062     Low  
cufflinks 0.208       High
cufflinks 0.073     Low  
cufflinks 0.058     Low  
cufflinks 0.075        
cufflinks 0.056     Low  
cufflinks 0.048     Low  
cufflinks 0.075        
cufflinks 0.041     Low  
cufflinks 0.077        

0 Strain