Gene : Glyma.20G176400 G. max Wm82.a2.v1
Defline:  (1 of 152) PF13414 - TPR repeat (TPR_11) Genomic Order:  1764
Name:  ? Glyma.20G176400 Secondary Identifier:  ? PAC:30521524
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G176400 0.5kb upstream 0.5kb upstream 5109 true Chr20: 41365682-41370790 Glycine max
Glyma.20G176400 0.5kb upstream 0.5kb upstream 500 false Chr20: 41365682-41366181 Glycine max
Glyma.20G176400 0.5kb downstream 0.5kb downstream 5109 true Chr20: 41366182-41371290 Glycine max
Glyma.20G176400 0.5kb downstream 0.5kb downstream 500 false Chr20: 41370791-41371290 Glycine max
Glyma.20G176400 1.0kb upstream 1.0kb upstream 5609 true Chr20: 41365182-41370790 Glycine max
Glyma.20G176400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 41365182-41366181 Glycine max
Glyma.20G176400 1.0kb downstream 1.0kb downstream 5609 true Chr20: 41366182-41371790 Glycine max
Glyma.20G176400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 41370791-41371790 Glycine max
Glyma.20G176400 2.0kb upstream 2.0kb upstream 6609 true Chr20: 41364182-41370790 Glycine max
Glyma.20G176400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 41364182-41366181 Glycine max
Glyma.20G176400 2.0kb downstream 2.0kb downstream 6609 true Chr20: 41366182-41372790 Glycine max
Glyma.20G176400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 41370791-41372790 Glycine max
Glyma.20G176400 5.0kb upstream 5.0kb upstream 9609 true Chr20: 41361182-41370790 Glycine max
Glyma.20G176400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 41361182-41366181 Glycine max
Glyma.20G176400 5.0kb downstream 5.0kb downstream 9609 true Chr20: 41366182-41375790 Glycine max
Glyma.20G176400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 41370791-41375790 Glycine max
Glyma.20G176400 10.0kb upstream 10.0kb upstream 14609 true Chr20: 41356182-41370790 Glycine max
Glyma.20G176400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 41356182-41366181 Glycine max
Glyma.20G176400 10.0kb downstream 10.0kb downstream 14609 true Chr20: 41366182-41380790 Glycine max
Glyma.20G176400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 41370791-41380790 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304673 5265 Fabidae View MSA
124066408 5270 Rosid View MSA
123743550 5271 Pentapetalae View MSA
122794346 5272 Eudicot View MSA
122044737 5273 Angiosperm View MSA
121345033 5274 Embryophyte View MSA
123428414 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.85809 0.0 40.3849   High
cufflinks 11.7666 0.0 47.2206   High
cufflinks 4.22644 0.0 21.5469    
cufflinks 7.72228 0.0 32.8634    
cufflinks 4.46289 0.0 22.0425    
cufflinks 2.4782 0.0 13.5868   Low
cufflinks 7.74775 0.0 32.5737    
cufflinks 5.07751 0.0 24.037    
cufflinks 4.56014 0.0 21.8967    
cufflinks 1.577        
cufflinks 0.25       Low
cufflinks 1.762        
cufflinks 0.495        
cufflinks 0.438        
cufflinks 0.446        
cufflinks 6.433       High
cufflinks 0.39        
cufflinks 1.751        
cufflinks 2.625        
cufflinks 6.467       High
cufflinks 0.174       Low
cufflinks 5.49       High
cufflinks 6.452       High
cufflinks 0.246       Low
cufflinks 6.008       High
cufflinks 0.256       Low

0 Strain