Gene : Glyma.19G249900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23346:SF7 - TRANSLATIONAL ACTIVATOR GCN1 Genomic Order:  2499
Name:  ? Glyma.19G249900 Secondary Identifier:  ? PAC:30513233
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G249900 0.5kb upstream 0.5kb upstream 29833 true Chr19: 49563974-49593806 Glycine max
Glyma.19G249900 0.5kb upstream 0.5kb upstream 500 false Chr19: 49593307-49593806 Glycine max
Glyma.19G249900 0.5kb downstream 0.5kb downstream 29833 true Chr19: 49563474-49593306 Glycine max
Glyma.19G249900 0.5kb downstream 0.5kb downstream 500 false Chr19: 49563474-49563973 Glycine max
Glyma.19G249900 1.0kb upstream 1.0kb upstream 30333 true Chr19: 49563974-49594306 Glycine max
Glyma.19G249900 1.0kb upstream 1.0kb upstream 1000 false Chr19: 49593307-49594306 Glycine max
Glyma.19G249900 1.0kb downstream 1.0kb downstream 30333 true Chr19: 49562974-49593306 Glycine max
Glyma.19G249900 1.0kb downstream 1.0kb downstream 1000 false Chr19: 49562974-49563973 Glycine max
Glyma.19G249900 2.0kb upstream 2.0kb upstream 31333 true Chr19: 49563974-49595306 Glycine max
Glyma.19G249900 2.0kb upstream 2.0kb upstream 2000 false Chr19: 49593307-49595306 Glycine max
Glyma.19G249900 2.0kb downstream 2.0kb downstream 31333 true Chr19: 49561974-49593306 Glycine max
Glyma.19G249900 2.0kb downstream 2.0kb downstream 2000 false Chr19: 49561974-49563973 Glycine max
Glyma.19G249900 5.0kb upstream 5.0kb upstream 34333 true Chr19: 49563974-49598306 Glycine max
Glyma.19G249900 5.0kb upstream 5.0kb upstream 5000 false Chr19: 49593307-49598306 Glycine max
Glyma.19G249900 5.0kb downstream 5.0kb downstream 34333 true Chr19: 49558974-49593306 Glycine max
Glyma.19G249900 5.0kb downstream 5.0kb downstream 5000 false Chr19: 49558974-49563973 Glycine max
Glyma.19G249900 10.0kb upstream 10.0kb upstream 39333 true Chr19: 49563974-49603306 Glycine max
Glyma.19G249900 10.0kb upstream 10.0kb upstream 10000 false Chr19: 49593307-49603306 Glycine max
Glyma.19G249900 10.0kb downstream 10.0kb downstream 39333 true Chr19: 49553974-49593306 Glycine max
Glyma.19G249900 10.0kb downstream 10.0kb downstream 10000 false Chr19: 49553974-49563973 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303043 5265 Fabidae View MSA
124050351 5270 Rosid View MSA
123740065 5271 Pentapetalae View MSA
122789609 5272 Eudicot View MSA
122050896 5273 Angiosperm View MSA
121346458 5274 Embryophyte View MSA
123425740 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.91538 0.0 21.7912    
cufflinks 7.3116 0.0 20.0191    
cufflinks 5.65832 0.0 15.2752    
cufflinks 10.0859 0.0 28.479    
cufflinks 9.61905 0.0 26.9596    
cufflinks 2.02787 0.0 5.5054   Low
cufflinks 11.8627 0.0 34.0518   High
cufflinks 6.18967 0.0 16.7622    
cufflinks 6.62999 0.0 18.0274    
cufflinks 2.781        
cufflinks 0.592       Low
cufflinks 2.761        
cufflinks 3.324        
cufflinks 4.769       High
cufflinks 1.558        
cufflinks 2.688        
cufflinks 1.9        
cufflinks 3.798        
cufflinks 4.119       High
cufflinks 2.544        
cufflinks 0.912       Low
cufflinks 2.695        
cufflinks 2.873        
cufflinks 0.668       Low
cufflinks 2.721        
cufflinks 1.472        

0 Strain