Gene : Glyma.19G219700 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  2197
Name:  ? Glyma.19G219700 Secondary Identifier:  ? PAC:30512077
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1081 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G219700 0.5kb upstream 0.5kb upstream 3675 true Chr19: 47198635-47202309 Glycine max
Glyma.19G219700 0.5kb upstream 0.5kb upstream 500 false Chr19: 47201810-47202309 Glycine max
Glyma.19G219700 0.5kb downstream 0.5kb downstream 3675 true Chr19: 47198135-47201809 Glycine max
Glyma.19G219700 0.5kb downstream 0.5kb downstream 500 false Chr19: 47198135-47198634 Glycine max
Glyma.19G219700 1.0kb upstream 1.0kb upstream 4175 true Chr19: 47198635-47202809 Glycine max
Glyma.19G219700 1.0kb upstream 1.0kb upstream 1000 false Chr19: 47201810-47202809 Glycine max
Glyma.19G219700 1.0kb downstream 1.0kb downstream 4175 true Chr19: 47197635-47201809 Glycine max
Glyma.19G219700 1.0kb downstream 1.0kb downstream 1000 false Chr19: 47197635-47198634 Glycine max
Glyma.19G219700 2.0kb upstream 2.0kb upstream 5175 true Chr19: 47198635-47203809 Glycine max
Glyma.19G219700 2.0kb upstream 2.0kb upstream 2000 false Chr19: 47201810-47203809 Glycine max
Glyma.19G219700 2.0kb downstream 2.0kb downstream 5175 true Chr19: 47196635-47201809 Glycine max
Glyma.19G219700 2.0kb downstream 2.0kb downstream 2000 false Chr19: 47196635-47198634 Glycine max
Glyma.19G219700 5.0kb upstream 5.0kb upstream 8175 true Chr19: 47198635-47206809 Glycine max
Glyma.19G219700 5.0kb upstream 5.0kb upstream 5000 false Chr19: 47201810-47206809 Glycine max
Glyma.19G219700 5.0kb downstream 5.0kb downstream 8175 true Chr19: 47193635-47201809 Glycine max
Glyma.19G219700 5.0kb downstream 5.0kb downstream 5000 false Chr19: 47193635-47198634 Glycine max
Glyma.19G219700 10.0kb upstream 10.0kb upstream 13175 true Chr19: 47198635-47211809 Glycine max
Glyma.19G219700 10.0kb upstream 10.0kb upstream 10000 false Chr19: 47201810-47211809 Glycine max
Glyma.19G219700 10.0kb downstream 10.0kb downstream 13175 true Chr19: 47188635-47201809 Glycine max
Glyma.19G219700 10.0kb downstream 10.0kb downstream 10000 false Chr19: 47188635-47198634 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312422 5265 Fabidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.441521 0.0 2.15007    
cufflinks 0.0788861 0.0 0.316696 Low Low
cufflinks 1.15969 0.0 6.87175   High
cufflinks 0.632738 0.0 3.88149    
cufflinks 0.106412 0.0 0.424506 Low Low
cufflinks 0.875762 0.0 5.17759    
cufflinks 0.15932 0.0 0.622581 Low  
cufflinks 0.928632 0.0 5.36377    
cufflinks 0.002     Low Low
cufflinks 0.006     Low  
cufflinks 0.138       High
cufflinks 0.248       High
cufflinks 0.305       High
cufflinks 0.006     Low  
cufflinks 0.024     Low  
cufflinks 0.014     Low  
cufflinks 0.133       High
cufflinks 0.149       High
cufflinks 0.003     Low Low
cufflinks 0.024     Low  
cufflinks 0.019     Low  
cufflinks 0.014     Low  
cufflinks 0.036     Low  
cufflinks 0.019     Low  
cufflinks 0.021     Low  

0 Strain