Gene : Glyma.03G252300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23346:SF7 - TRANSLATIONAL ACTIVATOR GCN1 Genomic Order:  2523
Name:  ? Glyma.03G252300 Secondary Identifier:  ? PAC:30518729
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G252300 0.5kb upstream 0.5kb upstream 28242 true Chr03: 44781815-44810056 Glycine max
Glyma.03G252300 0.5kb upstream 0.5kb upstream 500 false Chr03: 44809557-44810056 Glycine max
Glyma.03G252300 0.5kb downstream 0.5kb downstream 28242 true Chr03: 44781315-44809556 Glycine max
Glyma.03G252300 0.5kb downstream 0.5kb downstream 500 false Chr03: 44781315-44781814 Glycine max
Glyma.03G252300 1.0kb upstream 1.0kb upstream 28742 true Chr03: 44781815-44810556 Glycine max
Glyma.03G252300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44809557-44810556 Glycine max
Glyma.03G252300 1.0kb downstream 1.0kb downstream 28742 true Chr03: 44780815-44809556 Glycine max
Glyma.03G252300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44780815-44781814 Glycine max
Glyma.03G252300 2.0kb upstream 2.0kb upstream 29742 true Chr03: 44781815-44811556 Glycine max
Glyma.03G252300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44809557-44811556 Glycine max
Glyma.03G252300 2.0kb downstream 2.0kb downstream 29742 true Chr03: 44779815-44809556 Glycine max
Glyma.03G252300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44779815-44781814 Glycine max
Glyma.03G252300 5.0kb upstream 5.0kb upstream 32742 true Chr03: 44781815-44814556 Glycine max
Glyma.03G252300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44809557-44814556 Glycine max
Glyma.03G252300 5.0kb downstream 5.0kb downstream 32742 true Chr03: 44776815-44809556 Glycine max
Glyma.03G252300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44776815-44781814 Glycine max
Glyma.03G252300 10.0kb upstream 10.0kb upstream 37742 true Chr03: 44781815-44819556 Glycine max
Glyma.03G252300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44809557-44819556 Glycine max
Glyma.03G252300 10.0kb downstream 10.0kb downstream 37742 true Chr03: 44771815-44809556 Glycine max
Glyma.03G252300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44771815-44781814 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303043 5265 Fabidae View MSA
124050351 5270 Rosid View MSA
123740065 5271 Pentapetalae View MSA
122789609 5272 Eudicot View MSA
122050896 5273 Angiosperm View MSA
121346458 5274 Embryophyte View MSA
123425740 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.10036 0.0 19.4005    
cufflinks 5.50429 0.0 14.8258    
cufflinks 4.08916 0.0 10.924    
cufflinks 6.71886 0.0 18.3057    
cufflinks 7.54697 0.0 20.7064    
cufflinks 2.09165 0.0 5.66401   Low
cufflinks 7.87174 0.0 21.6605    
cufflinks 5.10625 0.0 13.7116    
cufflinks 5.24215 0.0 14.0898    
cufflinks 2.303        
cufflinks 0.558       Low
cufflinks 2.369        
cufflinks 3.008        
cufflinks 4.124       High
cufflinks 1.455        
cufflinks 2.192        
cufflinks 1.977        
cufflinks 3.174        
cufflinks 3.275        
cufflinks 2.031        
cufflinks 0.931       Low
cufflinks 2.241        
cufflinks 2.38        
cufflinks 0.693       Low
cufflinks 2.146        
cufflinks 1.538        

0 Strain