Gene : Glyma.04G156000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12000:SF1 - GPI-ANCHOR TRANSAMIDASE Genomic Order:  1560
Name:  ? Glyma.04G156000 Secondary Identifier:  ? PAC:30491258
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G156000 0.5kb upstream 0.5kb upstream 8300 true Chr04: 36512791-36521090 Glycine max
Glyma.04G156000 0.5kb upstream 0.5kb upstream 500 false Chr04: 36520591-36521090 Glycine max
Glyma.04G156000 0.5kb downstream 0.5kb downstream 8300 true Chr04: 36512291-36520590 Glycine max
Glyma.04G156000 0.5kb downstream 0.5kb downstream 500 false Chr04: 36512291-36512790 Glycine max
Glyma.04G156000 1.0kb upstream 1.0kb upstream 8800 true Chr04: 36512791-36521590 Glycine max
Glyma.04G156000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 36520591-36521590 Glycine max
Glyma.04G156000 1.0kb downstream 1.0kb downstream 8800 true Chr04: 36511791-36520590 Glycine max
Glyma.04G156000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 36511791-36512790 Glycine max
Glyma.04G156000 2.0kb upstream 2.0kb upstream 9800 true Chr04: 36512791-36522590 Glycine max
Glyma.04G156000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 36520591-36522590 Glycine max
Glyma.04G156000 2.0kb downstream 2.0kb downstream 9800 true Chr04: 36510791-36520590 Glycine max
Glyma.04G156000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 36510791-36512790 Glycine max
Glyma.04G156000 5.0kb upstream 5.0kb upstream 12800 true Chr04: 36512791-36525590 Glycine max
Glyma.04G156000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 36520591-36525590 Glycine max
Glyma.04G156000 5.0kb downstream 5.0kb downstream 12800 true Chr04: 36507791-36520590 Glycine max
Glyma.04G156000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 36507791-36512790 Glycine max
Glyma.04G156000 10.0kb upstream 10.0kb upstream 17800 true Chr04: 36512791-36530590 Glycine max
Glyma.04G156000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 36520591-36530590 Glycine max
Glyma.04G156000 10.0kb downstream 10.0kb downstream 17800 true Chr04: 36502791-36520590 Glycine max
Glyma.04G156000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 36502791-36512790 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300090 5265 Fabidae View MSA
124063673 5270 Rosid View MSA
123739555 5271 Pentapetalae View MSA
122788571 5272 Eudicot View MSA
122045702 5273 Angiosperm View MSA
121347126 5274 Embryophyte View MSA
123428632 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.8019 0.0 34.8728   Low
cufflinks 8.32382 0.0 40.0819    
cufflinks 7.5456 0.0 37.1257    
cufflinks 9.27224 0.0 45.6739    
cufflinks 8.01488 0.0 38.5954    
cufflinks 7.1061 0.0 31.6432    
cufflinks 7.69316 0.0 37.1621    
cufflinks 11.1212 0.0 54.6507   High
cufflinks 5.98889 0.0 30.3697   Low
cufflinks 0.346        
cufflinks 0.07       Low
cufflinks 0.301        
cufflinks 0.381        
cufflinks 0.514       High
cufflinks 0.08       Low
cufflinks 0.249        
cufflinks 0.13        
cufflinks 0.477       High
cufflinks 0.388        
cufflinks 0.258        
cufflinks 0.1       Low
cufflinks 0.261        
cufflinks 0.3        
cufflinks 0.112       Low
cufflinks 0.244        
cufflinks 0.144        

0 Strain