Gene : Glyma.03G128900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  1289
Name:  ? Glyma.03G128900 Secondary Identifier:  ? PAC:30516739
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-5943 Glycine max pathologic  
Gmax PWY-5947 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G128900 0.5kb upstream 0.5kb upstream 2528 true Chr03: 34380097-34382624 Glycine max
Glyma.03G128900 0.5kb upstream 0.5kb upstream 500 false Chr03: 34380097-34380596 Glycine max
Glyma.03G128900 0.5kb downstream 0.5kb downstream 2528 true Chr03: 34380597-34383124 Glycine max
Glyma.03G128900 0.5kb downstream 0.5kb downstream 500 false Chr03: 34382625-34383124 Glycine max
Glyma.03G128900 1.0kb upstream 1.0kb upstream 3028 true Chr03: 34379597-34382624 Glycine max
Glyma.03G128900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 34379597-34380596 Glycine max
Glyma.03G128900 1.0kb downstream 1.0kb downstream 3028 true Chr03: 34380597-34383624 Glycine max
Glyma.03G128900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 34382625-34383624 Glycine max
Glyma.03G128900 2.0kb upstream 2.0kb upstream 4028 true Chr03: 34378597-34382624 Glycine max
Glyma.03G128900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 34378597-34380596 Glycine max
Glyma.03G128900 2.0kb downstream 2.0kb downstream 4028 true Chr03: 34380597-34384624 Glycine max
Glyma.03G128900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 34382625-34384624 Glycine max
Glyma.03G128900 5.0kb upstream 5.0kb upstream 7028 true Chr03: 34375597-34382624 Glycine max
Glyma.03G128900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 34375597-34380596 Glycine max
Glyma.03G128900 5.0kb downstream 5.0kb downstream 7028 true Chr03: 34380597-34387624 Glycine max
Glyma.03G128900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 34382625-34387624 Glycine max
Glyma.03G128900 10.0kb upstream 10.0kb upstream 12028 true Chr03: 34370597-34382624 Glycine max
Glyma.03G128900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 34370597-34380596 Glycine max
Glyma.03G128900 10.0kb downstream 10.0kb downstream 12028 true Chr03: 34380597-34392624 Glycine max
Glyma.03G128900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 34382625-34392624 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303951 5265 Fabidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.5907 0.0 89.3578 High High
cufflinks 5.54291 0.0 21.9079    
cufflinks 1.12252 0.0 4.68786   Low
cufflinks 6.56844 0.0 24.9943    
cufflinks 2.11053 0.0 9.68354    
cufflinks 1.28658 0.0 5.14347   Low
cufflinks 6.26615 0.0 24.0072    
cufflinks 2.88582 0.0 12.1736    
cufflinks 2.73355 0.0 11.4872    
cufflinks 1.45        
cufflinks 0.097       Low
cufflinks 1.528        
cufflinks 1.321        
cufflinks 1.302        
cufflinks 0.793        
cufflinks 6.821       High
cufflinks 0.132       Low
cufflinks 1.994        
cufflinks 3.195        
cufflinks 4.887        
cufflinks 0.36        
cufflinks 6.951       High
cufflinks 6.812       High
cufflinks 0.28       Low
cufflinks 6.678       High
cufflinks 0.283       Low

0 Strain