Gene : Glyma.02G229400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23083//PTHR23083:SF408 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  2294
Name:  ? Glyma.02G229400 Secondary Identifier:  ? PAC:30508417
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G229400 0.5kb upstream 0.5kb upstream 5547 true Chr02: 41687632-41693178 Glycine max
Glyma.02G229400 0.5kb upstream 0.5kb upstream 500 false Chr02: 41687632-41688131 Glycine max
Glyma.02G229400 0.5kb downstream 0.5kb downstream 5547 true Chr02: 41688132-41693678 Glycine max
Glyma.02G229400 0.5kb downstream 0.5kb downstream 500 false Chr02: 41693179-41693678 Glycine max
Glyma.02G229400 1.0kb upstream 1.0kb upstream 6047 true Chr02: 41687132-41693178 Glycine max
Glyma.02G229400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 41687132-41688131 Glycine max
Glyma.02G229400 1.0kb downstream 1.0kb downstream 6047 true Chr02: 41688132-41694178 Glycine max
Glyma.02G229400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 41693179-41694178 Glycine max
Glyma.02G229400 2.0kb upstream 2.0kb upstream 7047 true Chr02: 41686132-41693178 Glycine max
Glyma.02G229400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 41686132-41688131 Glycine max
Glyma.02G229400 2.0kb downstream 2.0kb downstream 7047 true Chr02: 41688132-41695178 Glycine max
Glyma.02G229400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 41693179-41695178 Glycine max
Glyma.02G229400 5.0kb upstream 5.0kb upstream 10047 true Chr02: 41683132-41693178 Glycine max
Glyma.02G229400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 41683132-41688131 Glycine max
Glyma.02G229400 5.0kb downstream 5.0kb downstream 10047 true Chr02: 41688132-41698178 Glycine max
Glyma.02G229400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 41693179-41698178 Glycine max
Glyma.02G229400 10.0kb upstream 10.0kb upstream 15047 true Chr02: 41678132-41693178 Glycine max
Glyma.02G229400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 41678132-41688131 Glycine max
Glyma.02G229400 10.0kb downstream 10.0kb downstream 15047 true Chr02: 41688132-41703178 Glycine max
Glyma.02G229400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 41693179-41703178 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311860 5265 Fabidae View MSA
124070940 5270 Rosid View MSA
123743745 5271 Pentapetalae View MSA
122791061 5272 Eudicot View MSA
122041529 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.415 0.0 6.87962   Low
cufflinks 5.59338 0.0 14.9921    
cufflinks 3.26211 0.0 8.99076    
cufflinks 3.46662 0.0 9.52374    
cufflinks 6.29529 0.0 16.8284    
cufflinks 8.73671 0.0 23.3336    
cufflinks 4.81565 0.0 12.9842    
cufflinks 9.83156 0.0 26.3345    
cufflinks 14.508 0.0 39.5817   High
cufflinks 8.442     High High
cufflinks 1.617       Low
cufflinks 4.081        
cufflinks 4.15        
cufflinks 3.249        
cufflinks 10.068     High High
cufflinks 3.933        
cufflinks 8.964     High High
cufflinks 3.938        
cufflinks 7.603     High High
cufflinks 5.01        
cufflinks 2.317       Low
cufflinks 4.55        
cufflinks 3.628        
cufflinks 1.42       Low
cufflinks 4.901        
cufflinks 3.741        

0 Strain