Gene : Glyma.02G258900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12309 - SEC61 GAMMA SUBUNIT Genomic Order:  2589
Name:  ? Glyma.02G258900 Secondary Identifier:  ? PAC:30508378
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G258900 0.5kb upstream 0.5kb upstream 2619 true Chr02: 44601141-44603759 Glycine max
Glyma.02G258900 0.5kb upstream 0.5kb upstream 500 false Chr02: 44601141-44601640 Glycine max
Glyma.02G258900 0.5kb downstream 0.5kb downstream 2619 true Chr02: 44601641-44604259 Glycine max
Glyma.02G258900 0.5kb downstream 0.5kb downstream 500 false Chr02: 44603760-44604259 Glycine max
Glyma.02G258900 1.0kb upstream 1.0kb upstream 3119 true Chr02: 44600641-44603759 Glycine max
Glyma.02G258900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 44600641-44601640 Glycine max
Glyma.02G258900 1.0kb downstream 1.0kb downstream 3119 true Chr02: 44601641-44604759 Glycine max
Glyma.02G258900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 44603760-44604759 Glycine max
Glyma.02G258900 2.0kb upstream 2.0kb upstream 4119 true Chr02: 44599641-44603759 Glycine max
Glyma.02G258900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 44599641-44601640 Glycine max
Glyma.02G258900 2.0kb downstream 2.0kb downstream 4119 true Chr02: 44601641-44605759 Glycine max
Glyma.02G258900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 44603760-44605759 Glycine max
Glyma.02G258900 5.0kb upstream 5.0kb upstream 7119 true Chr02: 44596641-44603759 Glycine max
Glyma.02G258900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 44596641-44601640 Glycine max
Glyma.02G258900 5.0kb downstream 5.0kb downstream 7119 true Chr02: 44601641-44608759 Glycine max
Glyma.02G258900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 44603760-44608759 Glycine max
Glyma.02G258900 10.0kb upstream 10.0kb upstream 12119 true Chr02: 44591641-44603759 Glycine max
Glyma.02G258900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 44591641-44601640 Glycine max
Glyma.02G258900 10.0kb downstream 10.0kb downstream 12119 true Chr02: 44601641-44613759 Glycine max
Glyma.02G258900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 44603760-44613759 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313003 5265 Fabidae View MSA
124065252 5270 Rosid View MSA
123752578 5271 Pentapetalae View MSA
122795924 5272 Eudicot View MSA
122042910 5273 Angiosperm View MSA
121349505 5274 Embryophyte View MSA
123424142 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.23 0.0 134.609 High  
cufflinks 61.5344 0.0 164.22 High  
cufflinks 42.1053 0.0 113.499 High  
cufflinks 28.5769 0.0 79.0359 High Low
cufflinks 100.97 0.0 271.896 High  
cufflinks 137.407 0.0 376.981 High High
cufflinks 80.8932 0.0 216.208 High  
cufflinks 79.4001 0.0 212.187 High  
cufflinks 85.8574 0.0 229.906 High  
cufflinks 23.438     High  
cufflinks 16.802     High  
cufflinks 13.358     High  
cufflinks 28.243     High High
cufflinks 34.274     High High
cufflinks 13.154     High  
cufflinks 13.636     High  
cufflinks 22.68     High  
cufflinks 18.601     High  
cufflinks 16.738     High  
cufflinks 9.122     High Low
cufflinks 21.89     High  
cufflinks 11.425     High Low
cufflinks 14.883     High  
cufflinks 25.241     High  
cufflinks 9.907     High Low
cufflinks 22.702     High  

0 Strain