Gene : Glyma.01G196400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31908:SF2 - NUCLEAR MATRIX CONSTITUENT PROTEIN 1-LIKE PROTEIN-RELATED Genomic Order:  1964
Name:  ? Glyma.01G196400 Secondary Identifier:  ? PAC:30542595
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G196400 0.5kb upstream 0.5kb upstream 5591 true Chr01: 53070004-53075594 Glycine max
Glyma.01G196400 0.5kb upstream 0.5kb upstream 500 false Chr01: 53075095-53075594 Glycine max
Glyma.01G196400 0.5kb downstream 0.5kb downstream 5591 true Chr01: 53069504-53075094 Glycine max
Glyma.01G196400 0.5kb downstream 0.5kb downstream 500 false Chr01: 53069504-53070003 Glycine max
Glyma.01G196400 1.0kb upstream 1.0kb upstream 6091 true Chr01: 53070004-53076094 Glycine max
Glyma.01G196400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 53075095-53076094 Glycine max
Glyma.01G196400 1.0kb downstream 1.0kb downstream 6091 true Chr01: 53069004-53075094 Glycine max
Glyma.01G196400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 53069004-53070003 Glycine max
Glyma.01G196400 2.0kb upstream 2.0kb upstream 7091 true Chr01: 53070004-53077094 Glycine max
Glyma.01G196400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 53075095-53077094 Glycine max
Glyma.01G196400 2.0kb downstream 2.0kb downstream 7091 true Chr01: 53068004-53075094 Glycine max
Glyma.01G196400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 53068004-53070003 Glycine max
Glyma.01G196400 5.0kb upstream 5.0kb upstream 10091 true Chr01: 53070004-53080094 Glycine max
Glyma.01G196400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 53075095-53080094 Glycine max
Glyma.01G196400 5.0kb downstream 5.0kb downstream 10091 true Chr01: 53065004-53075094 Glycine max
Glyma.01G196400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 53065004-53070003 Glycine max
Glyma.01G196400 10.0kb upstream 10.0kb upstream 15091 true Chr01: 53070004-53085094 Glycine max
Glyma.01G196400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 53075095-53085094 Glycine max
Glyma.01G196400 10.0kb downstream 10.0kb downstream 15091 true Chr01: 53060004-53075094 Glycine max
Glyma.01G196400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 53060004-53070003 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306162 5265 Fabidae View MSA
124068788 5270 Rosid View MSA
123740792 5271 Pentapetalae View MSA
122790412 5272 Eudicot View MSA
122047030 5273 Angiosperm View MSA
121346070 5274 Embryophyte View MSA
123380319 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0503643 0.0 0.200472 Low  
cufflinks 0.152466 0.0 0.580579 Low  
cufflinks 0.0437038 0.0 0.174601 Low Low
cufflinks 0.595405 0.0 2.09742    
cufflinks 0.183533 0.0 0.693543 Low  
cufflinks 4.07462 0.0 11.3787   High
cufflinks 0.0584084 0.0 0.231508 Low  
cufflinks 0.180279 0.0 0.680841 Low  
cufflinks 0.293078 0.0 1.08273    
cufflinks 0.438        
cufflinks 1.494       High
cufflinks 0.353        
cufflinks 1.081       High
cufflinks 0.204        
cufflinks 0.105       Low
cufflinks 0.132       Low
cufflinks 0.707        
cufflinks 0.604        
cufflinks 0.332        
cufflinks 0.142        
cufflinks 1.673       High
cufflinks 0.167        
cufflinks 0.08     Low Low
cufflinks 0.625        
cufflinks 0.14        
cufflinks 1.972       High

0 Strain