Gene : Glyma.01G226800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13452:SF10 - THUMP DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  2268
Name:  ? Glyma.01G226800 Secondary Identifier:  ? PAC:30542127
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G226800 0.5kb upstream 0.5kb upstream 5784 true Chr01: 55515509-55521292 Glycine max
Glyma.01G226800 0.5kb upstream 0.5kb upstream 500 false Chr01: 55520793-55521292 Glycine max
Glyma.01G226800 0.5kb downstream 0.5kb downstream 5784 true Chr01: 55515009-55520792 Glycine max
Glyma.01G226800 0.5kb downstream 0.5kb downstream 500 false Chr01: 55515009-55515508 Glycine max
Glyma.01G226800 1.0kb upstream 1.0kb upstream 6284 true Chr01: 55515509-55521792 Glycine max
Glyma.01G226800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 55520793-55521792 Glycine max
Glyma.01G226800 1.0kb downstream 1.0kb downstream 6284 true Chr01: 55514509-55520792 Glycine max
Glyma.01G226800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 55514509-55515508 Glycine max
Glyma.01G226800 2.0kb upstream 2.0kb upstream 7284 true Chr01: 55515509-55522792 Glycine max
Glyma.01G226800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 55520793-55522792 Glycine max
Glyma.01G226800 2.0kb downstream 2.0kb downstream 7284 true Chr01: 55513509-55520792 Glycine max
Glyma.01G226800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 55513509-55515508 Glycine max
Glyma.01G226800 5.0kb upstream 5.0kb upstream 10284 true Chr01: 55515509-55525792 Glycine max
Glyma.01G226800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 55520793-55525792 Glycine max
Glyma.01G226800 5.0kb downstream 5.0kb downstream 10284 true Chr01: 55510509-55520792 Glycine max
Glyma.01G226800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 55510509-55515508 Glycine max
Glyma.01G226800 10.0kb upstream 10.0kb upstream 15284 true Chr01: 55515509-55530792 Glycine max
Glyma.01G226800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 55520793-55530792 Glycine max
Glyma.01G226800 10.0kb downstream 10.0kb downstream 15284 true Chr01: 55505509-55520792 Glycine max
Glyma.01G226800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 55505509-55515508 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309732 5265 Fabidae View MSA
124062685 5270 Rosid View MSA
123737559 5271 Pentapetalae View MSA
122790815 5272 Eudicot View MSA
122045180 5273 Angiosperm View MSA
121346491 5274 Embryophyte View MSA
123424372 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.4029 0.0 49.5809    
cufflinks 15.0452 0.0 51.8736    
cufflinks 6.83917 0.0 26.5154   Low
cufflinks 10.9445 0.0 33.6072    
cufflinks 11.7767 0.0 41.2054    
cufflinks 7.92595 0.0 29.5062   Low
cufflinks 20.1049 0.0 69.1517   High
cufflinks 8.92988 0.0 32.5895    
cufflinks 10.4525 0.0 37.5792    
cufflinks 1.383       Low
cufflinks 1.511        
cufflinks 2.114        
cufflinks 2.596        
cufflinks 3.665       High
cufflinks 1.788        
cufflinks 2.493        
cufflinks 0.84       Low
cufflinks 2.32        
cufflinks 2.909        
cufflinks 3.191       High
cufflinks 2.042        
cufflinks 2.712        
cufflinks 2.196        
cufflinks 1.472        
cufflinks 2.967        
cufflinks 1.371       Low

0 Strain