Gene : Glyma.01G122800 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31503:SF1 - VACUOLAR CATION/PROTON EXCHANGER 1-RELATED Genomic Order:  1228
Name:  ? Glyma.01G122800 Secondary Identifier:  ? PAC:30543811
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G122800 0.5kb upstream 0.5kb upstream 5129 true Chr01: 42259238-42264366 Glycine max
Glyma.01G122800 0.5kb upstream 0.5kb upstream 500 false Chr01: 42263867-42264366 Glycine max
Glyma.01G122800 0.5kb downstream 0.5kb downstream 5129 true Chr01: 42258738-42263866 Glycine max
Glyma.01G122800 0.5kb downstream 0.5kb downstream 500 false Chr01: 42258738-42259237 Glycine max
Glyma.01G122800 1.0kb upstream 1.0kb upstream 5629 true Chr01: 42259238-42264866 Glycine max
Glyma.01G122800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 42263867-42264866 Glycine max
Glyma.01G122800 1.0kb downstream 1.0kb downstream 5629 true Chr01: 42258238-42263866 Glycine max
Glyma.01G122800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 42258238-42259237 Glycine max
Glyma.01G122800 2.0kb upstream 2.0kb upstream 6629 true Chr01: 42259238-42265866 Glycine max
Glyma.01G122800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 42263867-42265866 Glycine max
Glyma.01G122800 2.0kb downstream 2.0kb downstream 6629 true Chr01: 42257238-42263866 Glycine max
Glyma.01G122800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 42257238-42259237 Glycine max
Glyma.01G122800 5.0kb upstream 5.0kb upstream 9629 true Chr01: 42259238-42268866 Glycine max
Glyma.01G122800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 42263867-42268866 Glycine max
Glyma.01G122800 5.0kb downstream 5.0kb downstream 9629 true Chr01: 42254238-42263866 Glycine max
Glyma.01G122800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 42254238-42259237 Glycine max
Glyma.01G122800 10.0kb upstream 10.0kb upstream 14629 true Chr01: 42259238-42273866 Glycine max
Glyma.01G122800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 42263867-42273866 Glycine max
Glyma.01G122800 10.0kb downstream 10.0kb downstream 14629 true Chr01: 42249238-42263866 Glycine max
Glyma.01G122800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 42249238-42259237 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297107 5265 Fabidae View MSA
124065189 5270 Rosid View MSA
123739014 5271 Pentapetalae View MSA
122792056 5272 Eudicot View MSA
122048075 5273 Angiosperm View MSA
121310844 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0613439 0.0 0.247381 Low Low
cufflinks 0.0357176 0.0 0.148114 Low Low
cufflinks 2.4739 0.0 7.84723    
cufflinks 7.74482 0.0 21.3874   High
cufflinks 1.51698 0.0 5.1681    
cufflinks 0.203454 0.0 0.783018 Low  
cufflinks 5.40836 0.0 15.5224    
cufflinks 0.0478401 0.0 0.194969 Low Low
cufflinks 3.60757 0.0 10.9047    
cufflinks 0.035     Low Low
cufflinks 1.432        
cufflinks 1.318        
cufflinks 0.361        
cufflinks 1.202        
cufflinks 3.625       High
cufflinks 0.062     Low Low
cufflinks 0.181        
cufflinks 5.305       High
cufflinks 0.11        
cufflinks 0.03     Low Low
cufflinks 0.895        
cufflinks 0.096        
cufflinks 0.251        
cufflinks 0.63        
cufflinks 0.075     Low  
cufflinks 0.799        

0 Strain