Gene : Glyma.18G199400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23081:SF1 - RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 2 Genomic Order:  1994
Name:  ? Glyma.18G199400 Secondary Identifier:  ? PAC:30554785
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G199400 0.5kb upstream 0.5kb upstream 9831 true Chr18: 47809522-47819352 Glycine max
Glyma.18G199400 0.5kb upstream 0.5kb upstream 500 false Chr18: 47818853-47819352 Glycine max
Glyma.18G199400 0.5kb downstream 0.5kb downstream 9831 true Chr18: 47809022-47818852 Glycine max
Glyma.18G199400 0.5kb downstream 0.5kb downstream 500 false Chr18: 47809022-47809521 Glycine max
Glyma.18G199400 1.0kb upstream 1.0kb upstream 10331 true Chr18: 47809522-47819852 Glycine max
Glyma.18G199400 1.0kb upstream 1.0kb upstream 1000 false Chr18: 47818853-47819852 Glycine max
Glyma.18G199400 1.0kb downstream 1.0kb downstream 10331 true Chr18: 47808522-47818852 Glycine max
Glyma.18G199400 1.0kb downstream 1.0kb downstream 1000 false Chr18: 47808522-47809521 Glycine max
Glyma.18G199400 2.0kb upstream 2.0kb upstream 11331 true Chr18: 47809522-47820852 Glycine max
Glyma.18G199400 2.0kb upstream 2.0kb upstream 2000 false Chr18: 47818853-47820852 Glycine max
Glyma.18G199400 2.0kb downstream 2.0kb downstream 11331 true Chr18: 47807522-47818852 Glycine max
Glyma.18G199400 2.0kb downstream 2.0kb downstream 2000 false Chr18: 47807522-47809521 Glycine max
Glyma.18G199400 5.0kb upstream 5.0kb upstream 14331 true Chr18: 47809522-47823852 Glycine max
Glyma.18G199400 5.0kb upstream 5.0kb upstream 5000 false Chr18: 47818853-47823852 Glycine max
Glyma.18G199400 5.0kb downstream 5.0kb downstream 14331 true Chr18: 47804522-47818852 Glycine max
Glyma.18G199400 5.0kb downstream 5.0kb downstream 5000 false Chr18: 47804522-47809521 Glycine max
Glyma.18G199400 10.0kb upstream 10.0kb upstream 19331 true Chr18: 47809522-47828852 Glycine max
Glyma.18G199400 10.0kb upstream 10.0kb upstream 10000 false Chr18: 47818853-47828852 Glycine max
Glyma.18G199400 10.0kb downstream 10.0kb downstream 19331 true Chr18: 47799522-47818852 Glycine max
Glyma.18G199400 10.0kb downstream 10.0kb downstream 10000 false Chr18: 47799522-47809521 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304394 5265 Fabidae View MSA
124067423 5270 Rosid View MSA
123743129 5271 Pentapetalae View MSA
122789341 5272 Eudicot View MSA
122045496 5273 Angiosperm View MSA
121350163 5274 Embryophyte View MSA
123426321 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.41875 0.0 40.2458   High
cufflinks 5.29232 0.0 24.9345    
cufflinks 7.9916 0.0 41.9863   High
cufflinks 6.16656 0.0 28.4765    
cufflinks 5.62246 0.0 28.5414    
cufflinks 4.33551 0.0 21.9952   Low
cufflinks 5.14579 0.0 18.4673    
cufflinks 5.68052 0.0 24.0421    
cufflinks 5.04293 0.0 20.2747    
cufflinks 0.251        
cufflinks 0.152       Low
cufflinks 0.3        
cufflinks 0.264        
cufflinks 0.274        
cufflinks 0.13       Low
cufflinks 0.247        
cufflinks 0.194        
cufflinks 0.274        
cufflinks 0.37       High
cufflinks 0.244        
cufflinks 0.183        
cufflinks 0.289        
cufflinks 0.316       High
cufflinks 0.199        
cufflinks 0.241        
cufflinks 0.179        

0 Strain