Gene : Glyma.18G109800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12811 - VACUOLAR PROTEIN SORTING VPS16 Genomic Order:  1098
Name:  ? Glyma.18G109800 Secondary Identifier:  ? PAC:30558195
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G109800 0.5kb upstream 0.5kb upstream 8938 true Chr18: 12756893-12765830 Glycine max
Glyma.18G109800 0.5kb upstream 0.5kb upstream 500 false Chr18: 12756893-12757392 Glycine max
Glyma.18G109800 0.5kb downstream 0.5kb downstream 8938 true Chr18: 12757393-12766330 Glycine max
Glyma.18G109800 0.5kb downstream 0.5kb downstream 500 false Chr18: 12765831-12766330 Glycine max
Glyma.18G109800 1.0kb upstream 1.0kb upstream 9438 true Chr18: 12756393-12765830 Glycine max
Glyma.18G109800 1.0kb upstream 1.0kb upstream 1000 false Chr18: 12756393-12757392 Glycine max
Glyma.18G109800 1.0kb downstream 1.0kb downstream 9438 true Chr18: 12757393-12766830 Glycine max
Glyma.18G109800 1.0kb downstream 1.0kb downstream 1000 false Chr18: 12765831-12766830 Glycine max
Glyma.18G109800 2.0kb upstream 2.0kb upstream 10438 true Chr18: 12755393-12765830 Glycine max
Glyma.18G109800 2.0kb upstream 2.0kb upstream 2000 false Chr18: 12755393-12757392 Glycine max
Glyma.18G109800 2.0kb downstream 2.0kb downstream 10438 true Chr18: 12757393-12767830 Glycine max
Glyma.18G109800 2.0kb downstream 2.0kb downstream 2000 false Chr18: 12765831-12767830 Glycine max
Glyma.18G109800 5.0kb upstream 5.0kb upstream 13438 true Chr18: 12752393-12765830 Glycine max
Glyma.18G109800 5.0kb upstream 5.0kb upstream 5000 false Chr18: 12752393-12757392 Glycine max
Glyma.18G109800 5.0kb downstream 5.0kb downstream 13438 true Chr18: 12757393-12770830 Glycine max
Glyma.18G109800 5.0kb downstream 5.0kb downstream 5000 false Chr18: 12765831-12770830 Glycine max
Glyma.18G109800 10.0kb upstream 10.0kb upstream 18438 true Chr18: 12747393-12765830 Glycine max
Glyma.18G109800 10.0kb upstream 10.0kb upstream 10000 false Chr18: 12747393-12757392 Glycine max
Glyma.18G109800 10.0kb downstream 10.0kb downstream 18438 true Chr18: 12757393-12775830 Glycine max
Glyma.18G109800 10.0kb downstream 10.0kb downstream 10000 false Chr18: 12765831-12775830 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307893 5265 Fabidae View MSA
124062842 5270 Rosid View MSA
123745569 5271 Pentapetalae View MSA
122788117 5272 Eudicot View MSA
122043235 5273 Angiosperm View MSA
121346488 5274 Embryophyte View MSA
123426973 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.85306 0.0 12.6297   Low
cufflinks 4.96212 0.0 15.6547    
cufflinks 6.71835 0.0 29.3442   High
cufflinks 6.96944 0.0 28.7717   High
cufflinks 5.66459 0.0 17.4171    
cufflinks 3.90566 0.0 12.7696   Low
cufflinks 5.13833 0.0 22.0592    
cufflinks 6.12103 0.0 18.6523    
cufflinks 4.55344 0.0 14.4608    
cufflinks 1.505       High
cufflinks 0.589       Low
cufflinks 1.281        
cufflinks 1.302        
cufflinks 1.471        
cufflinks 0.787       Low
cufflinks 1.295        
cufflinks 0.744       Low
cufflinks 1.419        
cufflinks 1.54       High
cufflinks 1.279        
cufflinks 0.758       Low
cufflinks 1.302        
cufflinks 1.24        
cufflinks 0.804       Low
cufflinks 1.265        
cufflinks 0.895        

0 Strain