Gene : Glyma.18G052100 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Genomic Order:  521
Name:  ? Glyma.18G052100 Secondary Identifier:  ? PAC:30557666
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G052100 0.5kb upstream 0.5kb upstream 8653 true Chr18: 4503397-4512049 Glycine max
Glyma.18G052100 0.5kb upstream 0.5kb upstream 500 false Chr18: 4503397-4503896 Glycine max
Glyma.18G052100 0.5kb downstream 0.5kb downstream 8653 true Chr18: 4503897-4512549 Glycine max
Glyma.18G052100 0.5kb downstream 0.5kb downstream 500 false Chr18: 4512050-4512549 Glycine max
Glyma.18G052100 1.0kb upstream 1.0kb upstream 9153 true Chr18: 4502897-4512049 Glycine max
Glyma.18G052100 1.0kb upstream 1.0kb upstream 1000 false Chr18: 4502897-4503896 Glycine max
Glyma.18G052100 1.0kb downstream 1.0kb downstream 9153 true Chr18: 4503897-4513049 Glycine max
Glyma.18G052100 1.0kb downstream 1.0kb downstream 1000 false Chr18: 4512050-4513049 Glycine max
Glyma.18G052100 2.0kb upstream 2.0kb upstream 10153 true Chr18: 4501897-4512049 Glycine max
Glyma.18G052100 2.0kb upstream 2.0kb upstream 2000 false Chr18: 4501897-4503896 Glycine max
Glyma.18G052100 2.0kb downstream 2.0kb downstream 10153 true Chr18: 4503897-4514049 Glycine max
Glyma.18G052100 2.0kb downstream 2.0kb downstream 2000 false Chr18: 4512050-4514049 Glycine max
Glyma.18G052100 5.0kb upstream 5.0kb upstream 13153 true Chr18: 4498897-4512049 Glycine max
Glyma.18G052100 5.0kb upstream 5.0kb upstream 5000 false Chr18: 4498897-4503896 Glycine max
Glyma.18G052100 5.0kb downstream 5.0kb downstream 13153 true Chr18: 4503897-4517049 Glycine max
Glyma.18G052100 5.0kb downstream 5.0kb downstream 5000 false Chr18: 4512050-4517049 Glycine max
Glyma.18G052100 10.0kb upstream 10.0kb upstream 18153 true Chr18: 4493897-4512049 Glycine max
Glyma.18G052100 10.0kb upstream 10.0kb upstream 10000 false Chr18: 4493897-4503896 Glycine max
Glyma.18G052100 10.0kb downstream 10.0kb downstream 18153 true Chr18: 4503897-4522049 Glycine max
Glyma.18G052100 10.0kb downstream 10.0kb downstream 10000 false Chr18: 4512050-4522049 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312545 5265 Fabidae View MSA
124062028 5270 Rosid View MSA
123749673 5271 Pentapetalae View MSA
122797219 5272 Eudicot View MSA
122049123 5273 Angiosperm View MSA
121350931 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.90108 0.0 19.5704    
cufflinks 1.98562 0.0 9.72946   Low
cufflinks 2.97839 0.0 12.8469    
cufflinks 3.52128 0.0 14.4781    
cufflinks 4.00589 0.0 16.2406    
cufflinks 4.44589 0.0 16.17    
cufflinks 7.84282 0.0 37.9968   High
cufflinks 2.41611 0.0 12.1286   Low
cufflinks 4.90288 0.0 20.8092    
cufflinks 0.28        
cufflinks 1.694       High
cufflinks 0.433        
cufflinks 0.408        
cufflinks 0.408        
cufflinks 0.875        
cufflinks 0.308        
cufflinks 1.765       High
cufflinks 0.315        
cufflinks 0.435        
cufflinks 0.196       Low
cufflinks 2.692       High
cufflinks 0.244        
cufflinks 0.468        
cufflinks 3.218       High
cufflinks 0.204       Low
cufflinks 3.339       High

0 Strain