Gene : Glyma.17G245000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23054:SF29 - EXPRESSED PROTEIN Genomic Order:  2450
Name:  ? Glyma.17G245000 Secondary Identifier:  ? PAC:30481564
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G245000 0.5kb upstream 0.5kb upstream 4889   true Chr17: 40051100-40055988 Glycine max
Glyma.17G245000 0.5kb upstream 0.5kb upstream 500   false Chr17: 40051100-40051599 Glycine max
Glyma.17G245000 0.5kb downstream 0.5kb downstream 4889   true Chr17: 40051600-40056488 Glycine max
Glyma.17G245000 0.5kb downstream 0.5kb downstream 500   false Chr17: 40055989-40056488 Glycine max
Glyma.17G245000 1.0kb upstream 1.0kb upstream 5389   true Chr17: 40050600-40055988 Glycine max
Glyma.17G245000 1.0kb upstream 1.0kb upstream 1000   false Chr17: 40050600-40051599 Glycine max
Glyma.17G245000 1.0kb downstream 1.0kb downstream 5389   true Chr17: 40051600-40056988 Glycine max
Glyma.17G245000 1.0kb downstream 1.0kb downstream 1000   false Chr17: 40055989-40056988 Glycine max
Glyma.17G245000 2.0kb upstream 2.0kb upstream 6389   true Chr17: 40049600-40055988 Glycine max
Glyma.17G245000 2.0kb upstream 2.0kb upstream 2000   false Chr17: 40049600-40051599 Glycine max
Glyma.17G245000 2.0kb downstream 2.0kb downstream 6389   true Chr17: 40051600-40057988 Glycine max
Glyma.17G245000 2.0kb downstream 2.0kb downstream 2000   false Chr17: 40055989-40057988 Glycine max
Glyma.17G245000 5.0kb upstream 5.0kb upstream 9389   true Chr17: 40046600-40055988 Glycine max
Glyma.17G245000 5.0kb upstream 5.0kb upstream 5000   false Chr17: 40046600-40051599 Glycine max
Glyma.17G245000 5.0kb downstream 5.0kb downstream 9389   true Chr17: 40051600-40060988 Glycine max
Glyma.17G245000 5.0kb downstream 5.0kb downstream 5000   false Chr17: 40055989-40060988 Glycine max
Glyma.17G245000 10.0kb upstream 10.0kb upstream 14389   true Chr17: 40041600-40055988 Glycine max
Glyma.17G245000 10.0kb upstream 10.0kb upstream 10000   false Chr17: 40041600-40051599 Glycine max
Glyma.17G245000 10.0kb downstream 10.0kb downstream 14389   true Chr17: 40051600-40065988 Glycine max
Glyma.17G245000 10.0kb downstream 10.0kb downstream 10000   false Chr17: 40055989-40065988 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310894 5265 Fabidae View MSA
124074814 5270 Rosid View MSA
123744121 5271 Pentapetalae View MSA
122797812 5272 Eudicot View MSA
122041879 5273 Angiosperm View MSA
121350596 5274 Embryophyte View MSA
123381815 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.61349 0.0 11.9131   Low
cufflinks 5.54954 0.0 22.7912    
cufflinks 4.40903 0.0 19.0206    
cufflinks 20.2971 0.0 78.8454 High High
cufflinks 5.72405 0.0 23.8813    
cufflinks 5.50042 0.0 23.2005    
cufflinks 3.48969 0.0 16.5961    
cufflinks 2.72336 0.0 13.6359   Low
cufflinks 8.89671 0.0 35.9692    
cufflinks 1.555        
cufflinks 1.283        
cufflinks 1.704        
cufflinks 1.49        
cufflinks 0.646        
cufflinks 0.466       Low
cufflinks 0.694        
cufflinks 1.145        
cufflinks 3.994       High
cufflinks 0.852        
cufflinks 0.808        
cufflinks 1.096        
cufflinks 0.916        
cufflinks 0.49       Low
cufflinks 0.807        
cufflinks 0.759        
cufflinks 2.193       High

0 Strain