Gene : Glyma.17G225500 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11558//PTHR11558:SF30 - SPERMIDINE/SPERMINE SYNTHASE Genomic Order:  2255
Name:  ? Glyma.17G225500 Secondary Identifier:  ? PAC:30479205
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BSUBPOLYAMSYN-PWY Glycine max pathologic  
Gmax POLYAMINSYN3-PWY Glycine max pathologic  
Gmax PWY-7528 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G225500 0.5kb upstream 0.5kb upstream 6065   true Chr17: 37862147-37868211 Glycine max
Glyma.17G225500 0.5kb upstream 0.5kb upstream 500   false Chr17: 37867712-37868211 Glycine max
Glyma.17G225500 0.5kb downstream 0.5kb downstream 6065   true Chr17: 37861647-37867711 Glycine max
Glyma.17G225500 0.5kb downstream 0.5kb downstream 500   false Chr17: 37861647-37862146 Glycine max
Glyma.17G225500 1.0kb upstream 1.0kb upstream 6565   true Chr17: 37862147-37868711 Glycine max
Glyma.17G225500 1.0kb upstream 1.0kb upstream 1000   false Chr17: 37867712-37868711 Glycine max
Glyma.17G225500 1.0kb downstream 1.0kb downstream 6565   true Chr17: 37861147-37867711 Glycine max
Glyma.17G225500 1.0kb downstream 1.0kb downstream 1000   false Chr17: 37861147-37862146 Glycine max
Glyma.17G225500 2.0kb upstream 2.0kb upstream 7565   true Chr17: 37862147-37869711 Glycine max
Glyma.17G225500 2.0kb upstream 2.0kb upstream 2000   false Chr17: 37867712-37869711 Glycine max
Glyma.17G225500 2.0kb downstream 2.0kb downstream 7565   true Chr17: 37860147-37867711 Glycine max
Glyma.17G225500 2.0kb downstream 2.0kb downstream 2000   false Chr17: 37860147-37862146 Glycine max
Glyma.17G225500 5.0kb upstream 5.0kb upstream 10565   true Chr17: 37862147-37872711 Glycine max
Glyma.17G225500 5.0kb upstream 5.0kb upstream 5000   false Chr17: 37867712-37872711 Glycine max
Glyma.17G225500 5.0kb downstream 5.0kb downstream 10565   true Chr17: 37857147-37867711 Glycine max
Glyma.17G225500 5.0kb downstream 5.0kb downstream 5000   false Chr17: 37857147-37862146 Glycine max
Glyma.17G225500 10.0kb upstream 10.0kb upstream 15565   true Chr17: 37862147-37877711 Glycine max
Glyma.17G225500 10.0kb upstream 10.0kb upstream 10000   false Chr17: 37867712-37877711 Glycine max
Glyma.17G225500 10.0kb downstream 10.0kb downstream 15565   true Chr17: 37852147-37867711 Glycine max
Glyma.17G225500 10.0kb downstream 10.0kb downstream 10000   false Chr17: 37852147-37862146 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299011 5265 Fabidae View MSA
124068940 5270 Rosid View MSA
123748388 5271 Pentapetalae View MSA
122794179 5272 Eudicot View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.18864 0.0 14.5478    
cufflinks 6.90843 0.0 23.4705    
cufflinks 1.20672 0.0 7.08865    
cufflinks 5.4113 0.0 19.4112    
cufflinks 1.3572 0.0 5.74777    
cufflinks 9.7674 0.0 30.9622    
cufflinks 0.375031 0.0 1.85992   Low
cufflinks 18.0372 0.0 63.6478   High
cufflinks 6.19104 0.0 21.5698    
cufflinks 2.587       High
cufflinks 0.236        
cufflinks 1.002        
cufflinks 0.161       Low
cufflinks 0.018     Low Low
cufflinks 1.341        
cufflinks 0.758        
cufflinks 0.489        
cufflinks 1.223        
cufflinks 1.548        
cufflinks 0.644        
cufflinks 0.346        
cufflinks 0.76        
cufflinks 0.925        
cufflinks 0.638        
cufflinks 0.741        
cufflinks 0.292        

0 Strain