Gene : Glyma.17G157900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31908:SF2 - NUCLEAR MATRIX CONSTITUENT PROTEIN 1-LIKE PROTEIN-RELATED Genomic Order:  1579
Name:  ? Glyma.17G157900 Secondary Identifier:  ? PAC:30479017
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G157900 0.5kb upstream 0.5kb upstream 6768   true Chr17: 13509842-13516609 Glycine max
Glyma.17G157900 0.5kb upstream 0.5kb upstream 500   false Chr17: 13509842-13510341 Glycine max
Glyma.17G157900 0.5kb downstream 0.5kb downstream 6768   true Chr17: 13510342-13517109 Glycine max
Glyma.17G157900 0.5kb downstream 0.5kb downstream 500   false Chr17: 13516610-13517109 Glycine max
Glyma.17G157900 1.0kb upstream 1.0kb upstream 7268   true Chr17: 13509342-13516609 Glycine max
Glyma.17G157900 1.0kb upstream 1.0kb upstream 1000   false Chr17: 13509342-13510341 Glycine max
Glyma.17G157900 1.0kb downstream 1.0kb downstream 7268   true Chr17: 13510342-13517609 Glycine max
Glyma.17G157900 1.0kb downstream 1.0kb downstream 1000   false Chr17: 13516610-13517609 Glycine max
Glyma.17G157900 2.0kb upstream 2.0kb upstream 8268   true Chr17: 13508342-13516609 Glycine max
Glyma.17G157900 2.0kb upstream 2.0kb upstream 2000   false Chr17: 13508342-13510341 Glycine max
Glyma.17G157900 2.0kb downstream 2.0kb downstream 8268   true Chr17: 13510342-13518609 Glycine max
Glyma.17G157900 2.0kb downstream 2.0kb downstream 2000   false Chr17: 13516610-13518609 Glycine max
Glyma.17G157900 5.0kb upstream 5.0kb upstream 11268   true Chr17: 13505342-13516609 Glycine max
Glyma.17G157900 5.0kb upstream 5.0kb upstream 5000   false Chr17: 13505342-13510341 Glycine max
Glyma.17G157900 5.0kb downstream 5.0kb downstream 11268   true Chr17: 13510342-13521609 Glycine max
Glyma.17G157900 5.0kb downstream 5.0kb downstream 5000   false Chr17: 13516610-13521609 Glycine max
Glyma.17G157900 10.0kb upstream 10.0kb upstream 16268   true Chr17: 13500342-13516609 Glycine max
Glyma.17G157900 10.0kb upstream 10.0kb upstream 10000   false Chr17: 13500342-13510341 Glycine max
Glyma.17G157900 10.0kb downstream 10.0kb downstream 16268   true Chr17: 13510342-13526609 Glycine max
Glyma.17G157900 10.0kb downstream 10.0kb downstream 10000   false Chr17: 13516610-13526609 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306162 5265 Fabidae View MSA
124068788 5270 Rosid View MSA
123740792 5271 Pentapetalae View MSA
122790412 5272 Eudicot View MSA
122047030 5273 Angiosperm View MSA
121346070 5274 Embryophyte View MSA
123380319 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.4804 0.0 31.2775    
cufflinks 12.0827 0.0 33.0582   High
cufflinks 11.7133 0.0 32.057    
cufflinks 11.0212 0.0 30.0118    
cufflinks 6.70657 0.0 17.8987   Low
cufflinks 6.13637 0.0 16.3711   Low
cufflinks 10.292 0.0 27.8105    
cufflinks 8.17364 0.0 21.9172    
cufflinks 6.78915 0.0 18.1232   Low
cufflinks 11.229     High  
cufflinks 7.135     High Low
cufflinks 11.896     High  
cufflinks 10.072     High  
cufflinks 9.981     High  
cufflinks 5.363     High Low
cufflinks 16.078     High High
cufflinks 5.918       Low
cufflinks 13.698     High  
cufflinks 14.224     High  
cufflinks 16.504     High High
cufflinks 8.247     High  
cufflinks 16.839     High High
cufflinks 13.801     High  
cufflinks 6.964     High Low
cufflinks 17.436     High High
cufflinks 7.412     High  

0 Strain