Gene : Glyma.17G111200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12979:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 Genomic Order:  1112
Name:  ? Glyma.17G111200 Secondary Identifier:  ? PAC:30481188
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G111200 0.5kb upstream 0.5kb upstream 7187   true Chr17: 8724643-8731829 Glycine max
Glyma.17G111200 0.5kb upstream 0.5kb upstream 500   false Chr17: 8731330-8731829 Glycine max
Glyma.17G111200 0.5kb downstream 0.5kb downstream 7187   true Chr17: 8724143-8731329 Glycine max
Glyma.17G111200 0.5kb downstream 0.5kb downstream 500   false Chr17: 8724143-8724642 Glycine max
Glyma.17G111200 1.0kb upstream 1.0kb upstream 7687   true Chr17: 8724643-8732329 Glycine max
Glyma.17G111200 1.0kb upstream 1.0kb upstream 1000   false Chr17: 8731330-8732329 Glycine max
Glyma.17G111200 1.0kb downstream 1.0kb downstream 7687   true Chr17: 8723643-8731329 Glycine max
Glyma.17G111200 1.0kb downstream 1.0kb downstream 1000   false Chr17: 8723643-8724642 Glycine max
Glyma.17G111200 2.0kb upstream 2.0kb upstream 8687   true Chr17: 8724643-8733329 Glycine max
Glyma.17G111200 2.0kb upstream 2.0kb upstream 2000   false Chr17: 8731330-8733329 Glycine max
Glyma.17G111200 2.0kb downstream 2.0kb downstream 8687   true Chr17: 8722643-8731329 Glycine max
Glyma.17G111200 2.0kb downstream 2.0kb downstream 2000   false Chr17: 8722643-8724642 Glycine max
Glyma.17G111200 5.0kb upstream 5.0kb upstream 11687   true Chr17: 8724643-8736329 Glycine max
Glyma.17G111200 5.0kb upstream 5.0kb upstream 5000   false Chr17: 8731330-8736329 Glycine max
Glyma.17G111200 5.0kb downstream 5.0kb downstream 11687   true Chr17: 8719643-8731329 Glycine max
Glyma.17G111200 5.0kb downstream 5.0kb downstream 5000   false Chr17: 8719643-8724642 Glycine max
Glyma.17G111200 10.0kb upstream 10.0kb upstream 16687   true Chr17: 8724643-8741329 Glycine max
Glyma.17G111200 10.0kb upstream 10.0kb upstream 10000   false Chr17: 8731330-8741329 Glycine max
Glyma.17G111200 10.0kb downstream 10.0kb downstream 16687   true Chr17: 8714643-8731329 Glycine max
Glyma.17G111200 10.0kb downstream 10.0kb downstream 10000   false Chr17: 8714643-8724642 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041333 5273 Angiosperm View MSA
122303335 5265 Fabidae View MSA
124066173 5270 Rosid View MSA
123737593 5271 Pentapetalae View MSA
122791315 5272 Eudicot View MSA
121344566 5274 Embryophyte View MSA
123426128 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.90684 0.0 39.5135    
cufflinks 7.06971 0.0 34.534    
cufflinks 7.08432 0.0 34.4919    
cufflinks 7.09847 0.0 34.2662    
cufflinks 8.86991 0.0 40.7876   High
cufflinks 6.86803 0.0 32.0831    
cufflinks 7.65296 0.0 30.216    
cufflinks 7.08449 0.0 30.1879    
cufflinks 7.18228 0.0 37.5057    
cufflinks 0.57       Low
cufflinks 0.546       Low
cufflinks 0.711        
cufflinks 0.696        
cufflinks 0.893       High
cufflinks 0.511       Low
cufflinks 0.803        
cufflinks 0.523       Low
cufflinks 0.734        
cufflinks 0.77        
cufflinks 0.78        
cufflinks 0.611        
cufflinks 0.823        
cufflinks 0.87       High
cufflinks 0.622        
cufflinks 0.777        
cufflinks 0.658        

0 Strain