Gene : Glyma.17G080700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31251:SF22 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 15-RELATED Genomic Order:  807
Name:  ? Glyma.17G080700 Secondary Identifier:  ? PAC:30479829
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G080700 0.5kb upstream 0.5kb upstream 5912   true Chr17: 6262133-6268044 Glycine max
Glyma.17G080700 0.5kb upstream 0.5kb upstream 500   false Chr17: 6267545-6268044 Glycine max
Glyma.17G080700 0.5kb downstream 0.5kb downstream 5912   true Chr17: 6261633-6267544 Glycine max
Glyma.17G080700 0.5kb downstream 0.5kb downstream 500   false Chr17: 6261633-6262132 Glycine max
Glyma.17G080700 1.0kb upstream 1.0kb upstream 6412   true Chr17: 6262133-6268544 Glycine max
Glyma.17G080700 1.0kb upstream 1.0kb upstream 1000   false Chr17: 6267545-6268544 Glycine max
Glyma.17G080700 1.0kb downstream 1.0kb downstream 6412   true Chr17: 6261133-6267544 Glycine max
Glyma.17G080700 1.0kb downstream 1.0kb downstream 1000   false Chr17: 6261133-6262132 Glycine max
Glyma.17G080700 2.0kb upstream 2.0kb upstream 7412   true Chr17: 6262133-6269544 Glycine max
Glyma.17G080700 2.0kb upstream 2.0kb upstream 2000   false Chr17: 6267545-6269544 Glycine max
Glyma.17G080700 2.0kb downstream 2.0kb downstream 7412   true Chr17: 6260133-6267544 Glycine max
Glyma.17G080700 2.0kb downstream 2.0kb downstream 2000   false Chr17: 6260133-6262132 Glycine max
Glyma.17G080700 5.0kb upstream 5.0kb upstream 10412   true Chr17: 6262133-6272544 Glycine max
Glyma.17G080700 5.0kb upstream 5.0kb upstream 5000   false Chr17: 6267545-6272544 Glycine max
Glyma.17G080700 5.0kb downstream 5.0kb downstream 10412   true Chr17: 6257133-6267544 Glycine max
Glyma.17G080700 5.0kb downstream 5.0kb downstream 5000   false Chr17: 6257133-6262132 Glycine max
Glyma.17G080700 10.0kb upstream 10.0kb upstream 15412   true Chr17: 6262133-6277544 Glycine max
Glyma.17G080700 10.0kb upstream 10.0kb upstream 10000   false Chr17: 6267545-6277544 Glycine max
Glyma.17G080700 10.0kb downstream 10.0kb downstream 15412   true Chr17: 6252133-6267544 Glycine max
Glyma.17G080700 10.0kb downstream 10.0kb downstream 10000   false Chr17: 6252133-6262132 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303700 5265 Fabidae View MSA
124069639 5270 Rosid View MSA
123751370 5271 Pentapetalae View MSA
122794305 5272 Eudicot View MSA
122050333 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121351727 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.960258 0.0 4.94288    
cufflinks 5.96097 0.0 21.7727   High
cufflinks 3.79242 0.0 15.1015   High
cufflinks 4.85894 0.0 18.2732   High
cufflinks 1.01551 0.0 3.80774    
cufflinks 0.679831 0.0 3.72901    
cufflinks 0.443494 0.0 2.02704   Low
cufflinks 0.959614 0.0 3.63741    
cufflinks 1.05114 0.0 3.93048    
cufflinks 0.821        
cufflinks 0.061       Low
cufflinks 1.864       High
cufflinks 0.278        
cufflinks 0.331        
cufflinks 0.008     Low Low
cufflinks 0.63        
cufflinks 0.705        
cufflinks 2.103       High
cufflinks 2.729       High
cufflinks 0.356        
cufflinks 0.068       Low
cufflinks 0.439        
cufflinks 0.702        
cufflinks 0.119        
cufflinks 0.349        
cufflinks 0.197        

0 Strain