Gene : Glyma.16G139800 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1398
Name:  ? Glyma.16G139800 Secondary Identifier:  ? PAC:30560275
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G139800 0.5kb upstream 0.5kb upstream 3039 true Chr16: 29724886-29727924 Glycine max
Glyma.16G139800 0.5kb upstream 0.5kb upstream 500 false Chr16: 29724886-29725385 Glycine max
Glyma.16G139800 0.5kb downstream 0.5kb downstream 3039 true Chr16: 29725386-29728424 Glycine max
Glyma.16G139800 0.5kb downstream 0.5kb downstream 500 false Chr16: 29727925-29728424 Glycine max
Glyma.16G139800 1.0kb upstream 1.0kb upstream 3539 true Chr16: 29724386-29727924 Glycine max
Glyma.16G139800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 29724386-29725385 Glycine max
Glyma.16G139800 1.0kb downstream 1.0kb downstream 3539 true Chr16: 29725386-29728924 Glycine max
Glyma.16G139800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 29727925-29728924 Glycine max
Glyma.16G139800 2.0kb upstream 2.0kb upstream 4539 true Chr16: 29723386-29727924 Glycine max
Glyma.16G139800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 29723386-29725385 Glycine max
Glyma.16G139800 2.0kb downstream 2.0kb downstream 4539 true Chr16: 29725386-29729924 Glycine max
Glyma.16G139800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 29727925-29729924 Glycine max
Glyma.16G139800 5.0kb upstream 5.0kb upstream 7539 true Chr16: 29720386-29727924 Glycine max
Glyma.16G139800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 29720386-29725385 Glycine max
Glyma.16G139800 5.0kb downstream 5.0kb downstream 7539 true Chr16: 29725386-29732924 Glycine max
Glyma.16G139800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 29727925-29732924 Glycine max
Glyma.16G139800 10.0kb upstream 10.0kb upstream 12539 true Chr16: 29715386-29727924 Glycine max
Glyma.16G139800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 29715386-29725385 Glycine max
Glyma.16G139800 10.0kb downstream 10.0kb downstream 12539 true Chr16: 29725386-29737924 Glycine max
Glyma.16G139800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 29727925-29737924 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.281914 0.0 2.00858   Low
cufflinks 1.08011 0.0 6.02058   High
cufflinks 0.291433 0.0 1.94311   Low
cufflinks 0.682439 0.0 4.1627    
cufflinks 0.3701 0.0 2.42802    
cufflinks 0.593281 0.0 3.65034    
cufflinks 0.719228 0.0 4.32543    
cufflinks 0.290239 0.0 1.97992   Low
cufflinks 0.738406 0.0 4.46154    
cufflinks 0.102        
cufflinks 0.017     Low Low
cufflinks 0.182        
cufflinks 0.185        
cufflinks 0.206        
cufflinks 0.04     Low  
cufflinks 0.148        
cufflinks 0.02     Low Low
cufflinks 0.219        
cufflinks 0.208        
cufflinks 0.227        
cufflinks 0.007     Low Low
cufflinks 0.172        
cufflinks 0.238        
cufflinks 0.033     Low  
cufflinks 0.167        
cufflinks 0.018     Low Low

0 Strain