Gene : Glyma.16G165400 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1654
Name:  ? Glyma.16G165400 Secondary Identifier:  ? PAC:30561328
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G165400 0.5kb upstream 0.5kb upstream 2162 true Chr16: 32452671-32454832 Glycine max
Glyma.16G165400 0.5kb upstream 0.5kb upstream 500 false Chr16: 32452671-32453170 Glycine max
Glyma.16G165400 0.5kb downstream 0.5kb downstream 2162 true Chr16: 32453171-32455332 Glycine max
Glyma.16G165400 0.5kb downstream 0.5kb downstream 500 false Chr16: 32454833-32455332 Glycine max
Glyma.16G165400 1.0kb upstream 1.0kb upstream 2662 true Chr16: 32452171-32454832 Glycine max
Glyma.16G165400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 32452171-32453170 Glycine max
Glyma.16G165400 1.0kb downstream 1.0kb downstream 2662 true Chr16: 32453171-32455832 Glycine max
Glyma.16G165400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 32454833-32455832 Glycine max
Glyma.16G165400 2.0kb upstream 2.0kb upstream 3662 true Chr16: 32451171-32454832 Glycine max
Glyma.16G165400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 32451171-32453170 Glycine max
Glyma.16G165400 2.0kb downstream 2.0kb downstream 3662 true Chr16: 32453171-32456832 Glycine max
Glyma.16G165400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 32454833-32456832 Glycine max
Glyma.16G165400 5.0kb upstream 5.0kb upstream 6662 true Chr16: 32448171-32454832 Glycine max
Glyma.16G165400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 32448171-32453170 Glycine max
Glyma.16G165400 5.0kb downstream 5.0kb downstream 6662 true Chr16: 32453171-32459832 Glycine max
Glyma.16G165400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 32454833-32459832 Glycine max
Glyma.16G165400 10.0kb upstream 10.0kb upstream 11662 true Chr16: 32443171-32454832 Glycine max
Glyma.16G165400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 32443171-32453170 Glycine max
Glyma.16G165400 10.0kb downstream 10.0kb downstream 11662 true Chr16: 32453171-32464832 Glycine max
Glyma.16G165400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 32454833-32464832 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.563081 0.0 2.08547    
cufflinks 1.08556 0.0 3.85622   High
cufflinks 0.273182 0.0 1.04264   Low
cufflinks 0.75226 0.0 2.73839    
cufflinks 0.523428 0.0 1.94739    
cufflinks 0.401049 0.0 1.50919    
cufflinks 0.726706 0.0 2.65578    
cufflinks 0.36559 0.0 1.38068    
cufflinks 0.625475 0.0 2.30208    
cufflinks 0.564        
cufflinks 0.15       Low
cufflinks 1.063        
cufflinks 1.167        
cufflinks 1.329        
cufflinks 0.292        
cufflinks 2.017        
cufflinks 0.106       Low
cufflinks 2.024        
cufflinks 1.583        
cufflinks 2.014        
cufflinks 0.124       Low
cufflinks 2.075        
cufflinks 2.262       High
cufflinks 0.199       Low
cufflinks 1.782        
cufflinks 0.123       Low

0 Strain