Gene : Glyma.16G162700 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1627
Name:  ? Glyma.16G162700 Secondary Identifier:  ? PAC:30562148
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G162700 0.5kb upstream 0.5kb upstream 3084 true Chr16: 32157331-32160414 Glycine max
Glyma.16G162700 0.5kb upstream 0.5kb upstream 500 false Chr16: 32159915-32160414 Glycine max
Glyma.16G162700 0.5kb downstream 0.5kb downstream 3084 true Chr16: 32156831-32159914 Glycine max
Glyma.16G162700 0.5kb downstream 0.5kb downstream 500 false Chr16: 32156831-32157330 Glycine max
Glyma.16G162700 1.0kb upstream 1.0kb upstream 3584 true Chr16: 32157331-32160914 Glycine max
Glyma.16G162700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 32159915-32160914 Glycine max
Glyma.16G162700 1.0kb downstream 1.0kb downstream 3584 true Chr16: 32156331-32159914 Glycine max
Glyma.16G162700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 32156331-32157330 Glycine max
Glyma.16G162700 2.0kb upstream 2.0kb upstream 4584 true Chr16: 32157331-32161914 Glycine max
Glyma.16G162700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 32159915-32161914 Glycine max
Glyma.16G162700 2.0kb downstream 2.0kb downstream 4584 true Chr16: 32155331-32159914 Glycine max
Glyma.16G162700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 32155331-32157330 Glycine max
Glyma.16G162700 5.0kb upstream 5.0kb upstream 7584 true Chr16: 32157331-32164914 Glycine max
Glyma.16G162700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 32159915-32164914 Glycine max
Glyma.16G162700 5.0kb downstream 5.0kb downstream 7584 true Chr16: 32152331-32159914 Glycine max
Glyma.16G162700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 32152331-32157330 Glycine max
Glyma.16G162700 10.0kb upstream 10.0kb upstream 12584 true Chr16: 32157331-32169914 Glycine max
Glyma.16G162700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 32159915-32169914 Glycine max
Glyma.16G162700 10.0kb downstream 10.0kb downstream 12584 true Chr16: 32147331-32159914 Glycine max
Glyma.16G162700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 32147331-32157330 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.229638 0.0 0.879377    
cufflinks 0.51571 0.0 1.90011   High
cufflinks 0.258602 0.0 0.982101    
cufflinks 0.480862 0.0 1.77789   High
cufflinks 0.174376 0.0 0.676362 Low  
cufflinks 0.0836887 0.0 0.333275 Low Low
cufflinks 0.268213 0.0 1.02081    
cufflinks 0.257396 0.0 0.980073    
cufflinks 0.15242 0.0 0.593729 Low  
cufflinks 0.091     Low  
cufflinks 0.015     Low Low
cufflinks 0.164        
cufflinks 0.079     Low  
cufflinks 0.073        
cufflinks 0.022     Low Low
cufflinks 0.185        
cufflinks 0.005     Low Low
cufflinks 0.183        
cufflinks 0.159        
cufflinks 0.354       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.262        
cufflinks 0.286        
cufflinks 0.036     Low  
cufflinks 0.347       High
cufflinks 0.021     Low Low

0 Strain