Gene : Glyma.16G162800 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1628
Name:  ? Glyma.16G162800 Secondary Identifier:  ? PAC:30561708
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G162800 0.5kb upstream 0.5kb upstream 2069 true Chr16: 32167100-32169168 Glycine max
Glyma.16G162800 0.5kb upstream 0.5kb upstream 500 false Chr16: 32168669-32169168 Glycine max
Glyma.16G162800 0.5kb downstream 0.5kb downstream 2069 true Chr16: 32166600-32168668 Glycine max
Glyma.16G162800 0.5kb downstream 0.5kb downstream 500 false Chr16: 32166600-32167099 Glycine max
Glyma.16G162800 1.0kb upstream 1.0kb upstream 2569 true Chr16: 32167100-32169668 Glycine max
Glyma.16G162800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 32168669-32169668 Glycine max
Glyma.16G162800 1.0kb downstream 1.0kb downstream 2569 true Chr16: 32166100-32168668 Glycine max
Glyma.16G162800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 32166100-32167099 Glycine max
Glyma.16G162800 2.0kb upstream 2.0kb upstream 3569 true Chr16: 32167100-32170668 Glycine max
Glyma.16G162800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 32168669-32170668 Glycine max
Glyma.16G162800 2.0kb downstream 2.0kb downstream 3569 true Chr16: 32165100-32168668 Glycine max
Glyma.16G162800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 32165100-32167099 Glycine max
Glyma.16G162800 5.0kb upstream 5.0kb upstream 6569 true Chr16: 32167100-32173668 Glycine max
Glyma.16G162800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 32168669-32173668 Glycine max
Glyma.16G162800 5.0kb downstream 5.0kb downstream 6569 true Chr16: 32162100-32168668 Glycine max
Glyma.16G162800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 32162100-32167099 Glycine max
Glyma.16G162800 10.0kb upstream 10.0kb upstream 11569 true Chr16: 32167100-32178668 Glycine max
Glyma.16G162800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 32168669-32178668 Glycine max
Glyma.16G162800 10.0kb downstream 10.0kb downstream 11569 true Chr16: 32157100-32168668 Glycine max
Glyma.16G162800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 32157100-32167099 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.778536 0.0 2.843    
cufflinks 2.00889 0.0 6.78418   High
cufflinks 0.313657 0.0 1.19325   Low
cufflinks 1.27807 0.0 4.5047    
cufflinks 0.66892 0.0 2.46535    
cufflinks 0.402617 0.0 1.51917   Low
cufflinks 1.27229 0.0 4.49699    
cufflinks 1.07365 0.0 3.83593    
cufflinks 0.524227 0.0 1.95406    
cufflinks 0.549        
cufflinks 0.025     Low Low
cufflinks 0.99        
cufflinks 0.733        
cufflinks 1.15        
cufflinks 0.06       Low
cufflinks 1.894        
cufflinks 0.042     Low Low
cufflinks 2.012        
cufflinks 1.301        
cufflinks 2.902       High
cufflinks 0.071       Low
cufflinks 2.338        
cufflinks 2.261        
cufflinks 0.061       Low
cufflinks 1.999        
cufflinks 0.04     Low Low

0 Strain