Gene : Glyma.16G162100 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1621
Name:  ? Glyma.16G162100 Secondary Identifier:  ? PAC:30561014
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G162100 0.5kb upstream 0.5kb upstream 2159 true Chr16: 32118458-32120616 Glycine max
Glyma.16G162100 0.5kb upstream 0.5kb upstream 500 false Chr16: 32118458-32118957 Glycine max
Glyma.16G162100 0.5kb downstream 0.5kb downstream 2159 true Chr16: 32118958-32121116 Glycine max
Glyma.16G162100 0.5kb downstream 0.5kb downstream 500 false Chr16: 32120617-32121116 Glycine max
Glyma.16G162100 1.0kb upstream 1.0kb upstream 2659 true Chr16: 32117958-32120616 Glycine max
Glyma.16G162100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 32117958-32118957 Glycine max
Glyma.16G162100 1.0kb downstream 1.0kb downstream 2659 true Chr16: 32118958-32121616 Glycine max
Glyma.16G162100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 32120617-32121616 Glycine max
Glyma.16G162100 2.0kb upstream 2.0kb upstream 3659 true Chr16: 32116958-32120616 Glycine max
Glyma.16G162100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 32116958-32118957 Glycine max
Glyma.16G162100 2.0kb downstream 2.0kb downstream 3659 true Chr16: 32118958-32122616 Glycine max
Glyma.16G162100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 32120617-32122616 Glycine max
Glyma.16G162100 5.0kb upstream 5.0kb upstream 6659 true Chr16: 32113958-32120616 Glycine max
Glyma.16G162100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 32113958-32118957 Glycine max
Glyma.16G162100 5.0kb downstream 5.0kb downstream 6659 true Chr16: 32118958-32125616 Glycine max
Glyma.16G162100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 32120617-32125616 Glycine max
Glyma.16G162100 10.0kb upstream 10.0kb upstream 11659 true Chr16: 32108958-32120616 Glycine max
Glyma.16G162100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 32108958-32118957 Glycine max
Glyma.16G162100 10.0kb downstream 10.0kb downstream 11659 true Chr16: 32118958-32130616 Glycine max
Glyma.16G162100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 32120617-32130616 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.657955 0.0 2.41852   Low
cufflinks 1.14171 0.0 4.04297    
cufflinks 0.561889 0.0 2.07523   Low
cufflinks 1.12398 0.0 3.98291    
cufflinks 1.08571 0.0 3.87036    
cufflinks 0.993766 0.0 3.55953    
cufflinks 1.42232 0.0 4.96232   High
cufflinks 0.953572 0.0 3.42182    
cufflinks 1.17799 0.0 4.16355    
cufflinks 0.877        
cufflinks 0.328       Low
cufflinks 1.252        
cufflinks 1.446        
cufflinks 2.138       High
cufflinks 0.732        
cufflinks 1.233        
cufflinks 0.384       Low
cufflinks 1.94       High
cufflinks 1.829        
cufflinks 1.566        
cufflinks 0.511       Low
cufflinks 1.668        
cufflinks 1.972       High
cufflinks 0.648        
cufflinks 1.547        
cufflinks 0.597        

0 Strain