Gene : Glyma.16G108200 G. max Wm82.a2.v1
Defline:  (1 of 105) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  1082
Name:  ? Glyma.16G108200 Secondary Identifier:  ? PAC:30559730
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G108200 0.5kb upstream 0.5kb upstream 1112 true Chr16: 21978572-21979683 Glycine max
Glyma.16G108200 0.5kb upstream 0.5kb upstream 500 false Chr16: 21979184-21979683 Glycine max
Glyma.16G108200 0.5kb downstream 0.5kb downstream 1112 true Chr16: 21978072-21979183 Glycine max
Glyma.16G108200 0.5kb downstream 0.5kb downstream 500 false Chr16: 21978072-21978571 Glycine max
Glyma.16G108200 1.0kb upstream 1.0kb upstream 1612 true Chr16: 21978572-21980183 Glycine max
Glyma.16G108200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 21979184-21980183 Glycine max
Glyma.16G108200 1.0kb downstream 1.0kb downstream 1612 true Chr16: 21977572-21979183 Glycine max
Glyma.16G108200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 21977572-21978571 Glycine max
Glyma.16G108200 2.0kb upstream 2.0kb upstream 2612 true Chr16: 21978572-21981183 Glycine max
Glyma.16G108200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 21979184-21981183 Glycine max
Glyma.16G108200 2.0kb downstream 2.0kb downstream 2612 true Chr16: 21976572-21979183 Glycine max
Glyma.16G108200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 21976572-21978571 Glycine max
Glyma.16G108200 5.0kb upstream 5.0kb upstream 5612 true Chr16: 21978572-21984183 Glycine max
Glyma.16G108200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 21979184-21984183 Glycine max
Glyma.16G108200 5.0kb downstream 5.0kb downstream 5612 true Chr16: 21973572-21979183 Glycine max
Glyma.16G108200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 21973572-21978571 Glycine max
Glyma.16G108200 10.0kb upstream 10.0kb upstream 10612 true Chr16: 21978572-21989183 Glycine max
Glyma.16G108200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 21979184-21989183 Glycine max
Glyma.16G108200 10.0kb downstream 10.0kb downstream 10612 true Chr16: 21968572-21979183 Glycine max
Glyma.16G108200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 21968572-21978571 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311822 5265 Fabidae View MSA
124067518 5270 Rosid View MSA
123748598 5271 Pentapetalae View MSA
122790893 5272 Eudicot View MSA
122043585 5273 Angiosperm View MSA
121310152 5274 Embryophyte View MSA
123347721 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.288357 0.0 1.15439    
cufflinks 0.135959 0.0 0.563797 Low Low
cufflinks 0.116797 0.0 0.488923 Low Low
cufflinks 0.327663 0.0 1.30375    
cufflinks 0.650625 0.0 2.52076   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.31717 0.0 1.26246    
cufflinks 0.446372 0.0 1.75476    
cufflinks 0.636629 0.0 2.46973   High
cufflinks 1.242       High
cufflinks 0.256        
cufflinks 0.287        
cufflinks 0.441        
cufflinks 0.069     Low Low
cufflinks 0.031     Low Low
cufflinks 0.53        
cufflinks 0.465        
cufflinks 0.683        
cufflinks 0.136        
cufflinks 0.695        
cufflinks 0.446        
cufflinks 0.765        
cufflinks 0.616        
cufflinks 0.188        
cufflinks 0.258        
cufflinks 0.326        

0 Strain