Gene : Glyma.16G079600 G. max Wm82.a2.v1
Defline:  (1 of 17) PTHR31194//PTHR31194:SF14 - SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR Genomic Order:  796
Name:  ? Glyma.16G079600 Secondary Identifier:  ? PAC:30560108
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G079600 0.5kb upstream 0.5kb upstream 1325 true Chr16: 8280664-8281988 Glycine max
Glyma.16G079600 0.5kb upstream 0.5kb upstream 500 false Chr16: 8281489-8281988 Glycine max
Glyma.16G079600 0.5kb downstream 0.5kb downstream 1325 true Chr16: 8280164-8281488 Glycine max
Glyma.16G079600 0.5kb downstream 0.5kb downstream 500 false Chr16: 8280164-8280663 Glycine max
Glyma.16G079600 1.0kb upstream 1.0kb upstream 1825 true Chr16: 8280664-8282488 Glycine max
Glyma.16G079600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 8281489-8282488 Glycine max
Glyma.16G079600 1.0kb downstream 1.0kb downstream 1825 true Chr16: 8279664-8281488 Glycine max
Glyma.16G079600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 8279664-8280663 Glycine max
Glyma.16G079600 2.0kb upstream 2.0kb upstream 2825 true Chr16: 8280664-8283488 Glycine max
Glyma.16G079600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 8281489-8283488 Glycine max
Glyma.16G079600 2.0kb downstream 2.0kb downstream 2825 true Chr16: 8278664-8281488 Glycine max
Glyma.16G079600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 8278664-8280663 Glycine max
Glyma.16G079600 5.0kb upstream 5.0kb upstream 5825 true Chr16: 8280664-8286488 Glycine max
Glyma.16G079600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 8281489-8286488 Glycine max
Glyma.16G079600 5.0kb downstream 5.0kb downstream 5825 true Chr16: 8275664-8281488 Glycine max
Glyma.16G079600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 8275664-8280663 Glycine max
Glyma.16G079600 10.0kb upstream 10.0kb upstream 10825 true Chr16: 8280664-8291488 Glycine max
Glyma.16G079600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 8281489-8291488 Glycine max
Glyma.16G079600 10.0kb downstream 10.0kb downstream 10825 true Chr16: 8270664-8281488 Glycine max
Glyma.16G079600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 8270664-8280663 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312240 5265 Fabidae View MSA
124072043 5270 Rosid View MSA
123744943 5271 Pentapetalae View MSA
122797737 5272 Eudicot View MSA
122048577 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.306032 0.0 1.1985   High
cufflinks 0.192467 0.0 0.766924 Low  
cufflinks 0.0183285 0.0 0.0867164 Low Low
cufflinks 0.135441 0.0 0.546672 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0950676 0.0 0.389973 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0550278 0.0 0.234521 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.563       High
cufflinks 0.105     Low  
cufflinks 0.075     Low Low
cufflinks 0.177        
cufflinks 0.093        
cufflinks 0.203        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.198        
cufflinks 0.236        
cufflinks 0.18        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.219        
cufflinks 0.086     Low Low
cufflinks 0.069       Low
cufflinks 0.224        
cufflinks 0.262        

0 Strain