Gene : Glyma.15G016400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10744:SF7 - 30S RIBOSOMAL PROTEIN S17, CHLOROPLASTIC Genomic Order:  164
Name:  ? Glyma.15G016400 Secondary Identifier:  ? PAC:30499166
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G016400 0.5kb upstream 0.5kb upstream 1316 true Chr15: 1272576-1273891 Glycine max
Glyma.15G016400 0.5kb upstream 0.5kb upstream 500 false Chr15: 1272576-1273075 Glycine max
Glyma.15G016400 0.5kb downstream 0.5kb downstream 1316 true Chr15: 1273076-1274391 Glycine max
Glyma.15G016400 0.5kb downstream 0.5kb downstream 500 false Chr15: 1273892-1274391 Glycine max
Glyma.15G016400 1.0kb upstream 1.0kb upstream 1816 true Chr15: 1272076-1273891 Glycine max
Glyma.15G016400 1.0kb upstream 1.0kb upstream 1000 false Chr15: 1272076-1273075 Glycine max
Glyma.15G016400 1.0kb downstream 1.0kb downstream 1816 true Chr15: 1273076-1274891 Glycine max
Glyma.15G016400 1.0kb downstream 1.0kb downstream 1000 false Chr15: 1273892-1274891 Glycine max
Glyma.15G016400 2.0kb upstream 2.0kb upstream 2816 true Chr15: 1271076-1273891 Glycine max
Glyma.15G016400 2.0kb upstream 2.0kb upstream 2000 false Chr15: 1271076-1273075 Glycine max
Glyma.15G016400 2.0kb downstream 2.0kb downstream 2816 true Chr15: 1273076-1275891 Glycine max
Glyma.15G016400 2.0kb downstream 2.0kb downstream 2000 false Chr15: 1273892-1275891 Glycine max
Glyma.15G016400 5.0kb upstream 5.0kb upstream 5816 true Chr15: 1268076-1273891 Glycine max
Glyma.15G016400 5.0kb upstream 5.0kb upstream 5000 false Chr15: 1268076-1273075 Glycine max
Glyma.15G016400 5.0kb downstream 5.0kb downstream 5816 true Chr15: 1273076-1278891 Glycine max
Glyma.15G016400 5.0kb downstream 5.0kb downstream 5000 false Chr15: 1273892-1278891 Glycine max
Glyma.15G016400 10.0kb upstream 10.0kb upstream 10816 true Chr15: 1263076-1273891 Glycine max
Glyma.15G016400 10.0kb upstream 10.0kb upstream 10000 false Chr15: 1263076-1273075 Glycine max
Glyma.15G016400 10.0kb downstream 10.0kb downstream 10816 true Chr15: 1273076-1283891 Glycine max
Glyma.15G016400 10.0kb downstream 10.0kb downstream 10000 false Chr15: 1273892-1283891 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313138 5265 Fabidae View MSA
124063542 5270 Rosid View MSA
123744369 5271 Pentapetalae View MSA
122786157 5272 Eudicot View MSA
122045320 5273 Angiosperm View MSA
121347348 5274 Embryophyte View MSA
123424165 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.3625 0.0 140.059 High High
cufflinks 65.2561 0.0 175.632 High High
cufflinks 28.6206 0.0 77.1649 High  
cufflinks 39.1851 0.0 104.588 High  
cufflinks 29.714 0.0 79.647 High  
cufflinks 21.7602 0.0 59.2447   Low
cufflinks 44.7825 0.0 119.507 High  
cufflinks 35.2007 0.0 94.0626 High  
cufflinks 19.1724 0.0 52.7145   Low
cufflinks 44.264     High  
cufflinks 8.511     High  
cufflinks 21.804     High  
cufflinks 15.071     High  
cufflinks 15.946     High  
cufflinks 6.186     High Low
cufflinks 94.548     High High
cufflinks 5.83       Low
cufflinks 28.072     High  
cufflinks 47.432     High  
cufflinks 89.419     High High
cufflinks 8.004     High Low
cufflinks 83.117     High High
cufflinks 83.213     High High
cufflinks 8.475     High  
cufflinks 83.013     High High
cufflinks 7.777     High Low

0 Strain