Gene : Glyma.14G046600 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  466
Name:  ? Glyma.14G046600 Secondary Identifier:  ? PAC:30532684
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-5943 Glycine max pathologic  
Gmax PWY-5947 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G046600 0.5kb upstream 0.5kb upstream 8294 true Chr14: 3546648-3554941 Glycine max
Glyma.14G046600 0.5kb upstream 0.5kb upstream 500 false Chr14: 3554442-3554941 Glycine max
Glyma.14G046600 0.5kb downstream 0.5kb downstream 8294 true Chr14: 3546148-3554441 Glycine max
Glyma.14G046600 0.5kb downstream 0.5kb downstream 500 false Chr14: 3546148-3546647 Glycine max
Glyma.14G046600 1.0kb upstream 1.0kb upstream 8794 true Chr14: 3546648-3555441 Glycine max
Glyma.14G046600 1.0kb upstream 1.0kb upstream 1000 false Chr14: 3554442-3555441 Glycine max
Glyma.14G046600 1.0kb downstream 1.0kb downstream 8794 true Chr14: 3545648-3554441 Glycine max
Glyma.14G046600 1.0kb downstream 1.0kb downstream 1000 false Chr14: 3545648-3546647 Glycine max
Glyma.14G046600 2.0kb upstream 2.0kb upstream 9794 true Chr14: 3546648-3556441 Glycine max
Glyma.14G046600 2.0kb upstream 2.0kb upstream 2000 false Chr14: 3554442-3556441 Glycine max
Glyma.14G046600 2.0kb downstream 2.0kb downstream 9794 true Chr14: 3544648-3554441 Glycine max
Glyma.14G046600 2.0kb downstream 2.0kb downstream 2000 false Chr14: 3544648-3546647 Glycine max
Glyma.14G046600 5.0kb upstream 5.0kb upstream 12794 true Chr14: 3546648-3559441 Glycine max
Glyma.14G046600 5.0kb upstream 5.0kb upstream 5000 false Chr14: 3554442-3559441 Glycine max
Glyma.14G046600 5.0kb downstream 5.0kb downstream 12794 true Chr14: 3541648-3554441 Glycine max
Glyma.14G046600 5.0kb downstream 5.0kb downstream 5000 false Chr14: 3541648-3546647 Glycine max
Glyma.14G046600 10.0kb upstream 10.0kb upstream 17794 true Chr14: 3546648-3564441 Glycine max
Glyma.14G046600 10.0kb upstream 10.0kb upstream 10000 false Chr14: 3554442-3564441 Glycine max
Glyma.14G046600 10.0kb downstream 10.0kb downstream 17794 true Chr14: 3536648-3554441 Glycine max
Glyma.14G046600 10.0kb downstream 10.0kb downstream 10000 false Chr14: 3536648-3546647 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307883 5265 Fabidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.45208 0.0 22.8909   High
cufflinks 2.21921 0.0 6.98649    
cufflinks 2.54411 0.0 7.80602    
cufflinks 4.65051 0.0 13.2375    
cufflinks 0.441138 0.0 1.62331    
cufflinks 0.237572 0.0 0.899719 Low Low
cufflinks 2.26588 0.0 7.1217    
cufflinks 3.43192 0.0 10.1433    
cufflinks 0.147617 0.0 0.570977 Low Low
cufflinks 1.498        
cufflinks 0.005     Low Low
cufflinks 0.615        
cufflinks 0.029     Low  
cufflinks 0.023     Low  
cufflinks 0.012     Low Low
cufflinks 2.151       High
cufflinks 0.021     Low  
cufflinks 1.382        
cufflinks 0.72        
cufflinks 1.791        
cufflinks 0.027     Low  
cufflinks 2.103       High
cufflinks 2.894       High
cufflinks 0.003     Low Low
cufflinks 2.19       High
cufflinks 0.008     Low Low

0 Strain