Gene : Glyma.13G356600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31734:SF5 - AUXIN-RESPONSIVE PROTEIN IAA27 Genomic Order:  3566
Name:  ? Glyma.13G356600 Secondary Identifier:  ? PAC:30505866
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G356600 0.5kb upstream 0.5kb upstream 2998 true Chr13: 44467797-44470794 Glycine max
Glyma.13G356600 0.5kb upstream 0.5kb upstream 500 false Chr13: 44470295-44470794 Glycine max
Glyma.13G356600 0.5kb downstream 0.5kb downstream 2998 true Chr13: 44467297-44470294 Glycine max
Glyma.13G356600 0.5kb downstream 0.5kb downstream 500 false Chr13: 44467297-44467796 Glycine max
Glyma.13G356600 1.0kb upstream 1.0kb upstream 3498 true Chr13: 44467797-44471294 Glycine max
Glyma.13G356600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 44470295-44471294 Glycine max
Glyma.13G356600 1.0kb downstream 1.0kb downstream 3498 true Chr13: 44466797-44470294 Glycine max
Glyma.13G356600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 44466797-44467796 Glycine max
Glyma.13G356600 2.0kb upstream 2.0kb upstream 4498 true Chr13: 44467797-44472294 Glycine max
Glyma.13G356600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 44470295-44472294 Glycine max
Glyma.13G356600 2.0kb downstream 2.0kb downstream 4498 true Chr13: 44465797-44470294 Glycine max
Glyma.13G356600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 44465797-44467796 Glycine max
Glyma.13G356600 5.0kb upstream 5.0kb upstream 7498 true Chr13: 44467797-44475294 Glycine max
Glyma.13G356600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 44470295-44475294 Glycine max
Glyma.13G356600 5.0kb downstream 5.0kb downstream 7498 true Chr13: 44462797-44470294 Glycine max
Glyma.13G356600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 44462797-44467796 Glycine max
Glyma.13G356600 10.0kb upstream 10.0kb upstream 12498 true Chr13: 44467797-44480294 Glycine max
Glyma.13G356600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 44470295-44480294 Glycine max
Glyma.13G356600 10.0kb downstream 10.0kb downstream 12498 true Chr13: 44457797-44470294 Glycine max
Glyma.13G356600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 44457797-44467796 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122245713 5265 Fabidae Singleton cluster - no MSA
123989789 5270 Rosid Singleton cluster - no MSA
123750768 5271 Pentapetalae View MSA
122791591 5272 Eudicot View MSA
122051273 5273 Angiosperm View MSA
121350717 5274 Embryophyte View MSA
123381856 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.5276 0.0 36.4306    
cufflinks 5.21393 0.0 15.2867    
cufflinks 20.2804 0.0 54.108 High  
cufflinks 20.4142 0.0 54.4625 High  
cufflinks 33.5449 0.0 90.5367 High  
cufflinks 25.891 0.0 69.2504 High  
cufflinks 1.29823 0.0 4.54952   Low
cufflinks 40.8523 0.0 111.919 High  
cufflinks 24.1519 0.0 64.5238 High  
cufflinks 39.919     High High
cufflinks 9.903     High  
cufflinks 10.07     High  
cufflinks 38.156     High High
cufflinks 28.328     High High
cufflinks 0.982       Low
cufflinks 6.9        
cufflinks 10.763     High  
cufflinks 15.771     High  
cufflinks 2.812       Low
cufflinks 7.721     High  
cufflinks 18.456     High  
cufflinks 6.377        
cufflinks 4.091        
cufflinks 9.482     High  
cufflinks 9.056     High  
cufflinks 19.64     High  

0 Strain