Gene : Glyma.13G202200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10543:SF37 - CAROTENOID 9,10(9',10')-CLEAVAGE DIOXYGENASE 1 Genomic Order:  2022
Name:  ? Glyma.13G202200 Secondary Identifier:  ? PAC:30504369
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G202200 0.5kb upstream 0.5kb upstream 7146 true Chr13: 31589181-31596326 Glycine max
Glyma.13G202200 0.5kb upstream 0.5kb upstream 500 false Chr13: 31589181-31589680 Glycine max
Glyma.13G202200 0.5kb downstream 0.5kb downstream 7146 true Chr13: 31589681-31596826 Glycine max
Glyma.13G202200 0.5kb downstream 0.5kb downstream 500 false Chr13: 31596327-31596826 Glycine max
Glyma.13G202200 1.0kb upstream 1.0kb upstream 7646 true Chr13: 31588681-31596326 Glycine max
Glyma.13G202200 1.0kb upstream 1.0kb upstream 1000 false Chr13: 31588681-31589680 Glycine max
Glyma.13G202200 1.0kb downstream 1.0kb downstream 7646 true Chr13: 31589681-31597326 Glycine max
Glyma.13G202200 1.0kb downstream 1.0kb downstream 1000 false Chr13: 31596327-31597326 Glycine max
Glyma.13G202200 2.0kb upstream 2.0kb upstream 8646 true Chr13: 31587681-31596326 Glycine max
Glyma.13G202200 2.0kb upstream 2.0kb upstream 2000 false Chr13: 31587681-31589680 Glycine max
Glyma.13G202200 2.0kb downstream 2.0kb downstream 8646 true Chr13: 31589681-31598326 Glycine max
Glyma.13G202200 2.0kb downstream 2.0kb downstream 2000 false Chr13: 31596327-31598326 Glycine max
Glyma.13G202200 5.0kb upstream 5.0kb upstream 11646 true Chr13: 31584681-31596326 Glycine max
Glyma.13G202200 5.0kb upstream 5.0kb upstream 5000 false Chr13: 31584681-31589680 Glycine max
Glyma.13G202200 5.0kb downstream 5.0kb downstream 11646 true Chr13: 31589681-31601326 Glycine max
Glyma.13G202200 5.0kb downstream 5.0kb downstream 5000 false Chr13: 31596327-31601326 Glycine max
Glyma.13G202200 10.0kb upstream 10.0kb upstream 16646 true Chr13: 31579681-31596326 Glycine max
Glyma.13G202200 10.0kb upstream 10.0kb upstream 10000 false Chr13: 31579681-31589680 Glycine max
Glyma.13G202200 10.0kb downstream 10.0kb downstream 16646 true Chr13: 31589681-31606326 Glycine max
Glyma.13G202200 10.0kb downstream 10.0kb downstream 10000 false Chr13: 31596327-31606326 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305426 5265 Fabidae View MSA
124065010 5270 Rosid View MSA
123749061 5271 Pentapetalae View MSA
122787138 5272 Eudicot View MSA
122045403 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 122.762 0.0 728.628 High High
cufflinks 51.7962 0.0 216.435 High  
cufflinks 58.1847 0.0 289.201 High  
cufflinks 49.5525 0.0 229.563 High  
cufflinks 29.3419 0.0 119.605 High Low
cufflinks 48.3734 0.0 223.535 High  
cufflinks 54.5606 0.0 260.457 High  
cufflinks 55.2268 0.0 234.91 High  
cufflinks 26.5741 0.0 99.1829 High Low
cufflinks 3.586        
cufflinks 0.716       Low
cufflinks 5.143        
cufflinks 2.975        
cufflinks 2.604        
cufflinks 0.917       Low
cufflinks 4.317        
cufflinks 1.888        
cufflinks 5.7       High
cufflinks 5.812       High
cufflinks 4.152        
cufflinks 1.255       Low
cufflinks 4.625        
cufflinks 5.332        
cufflinks 0.926       Low
cufflinks 4.795        
cufflinks 2.121        

0 Strain