Gene : Glyma.13G161100 G. max Wm82.a2.v1
Defline:  (1 of 9) PTHR11062:SF61 - XYLOGALACTURONAN BETA-1,3-XYLOSYLTRANSFERASE Genomic Order:  1611
Name:  ? Glyma.13G161100 Secondary Identifier:  ? PAC:30502749
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5980 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G161100 0.5kb upstream 0.5kb upstream 4310 true Chr13: 27675361-27679670 Glycine max
Glyma.13G161100 0.5kb upstream 0.5kb upstream 500 false Chr13: 27679171-27679670 Glycine max
Glyma.13G161100 0.5kb downstream 0.5kb downstream 4310 true Chr13: 27674861-27679170 Glycine max
Glyma.13G161100 0.5kb downstream 0.5kb downstream 500 false Chr13: 27674861-27675360 Glycine max
Glyma.13G161100 1.0kb upstream 1.0kb upstream 4810 true Chr13: 27675361-27680170 Glycine max
Glyma.13G161100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 27679171-27680170 Glycine max
Glyma.13G161100 1.0kb downstream 1.0kb downstream 4810 true Chr13: 27674361-27679170 Glycine max
Glyma.13G161100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 27674361-27675360 Glycine max
Glyma.13G161100 2.0kb upstream 2.0kb upstream 5810 true Chr13: 27675361-27681170 Glycine max
Glyma.13G161100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 27679171-27681170 Glycine max
Glyma.13G161100 2.0kb downstream 2.0kb downstream 5810 true Chr13: 27673361-27679170 Glycine max
Glyma.13G161100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 27673361-27675360 Glycine max
Glyma.13G161100 5.0kb upstream 5.0kb upstream 8810 true Chr13: 27675361-27684170 Glycine max
Glyma.13G161100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 27679171-27684170 Glycine max
Glyma.13G161100 5.0kb downstream 5.0kb downstream 8810 true Chr13: 27670361-27679170 Glycine max
Glyma.13G161100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 27670361-27675360 Glycine max
Glyma.13G161100 10.0kb upstream 10.0kb upstream 13810 true Chr13: 27675361-27689170 Glycine max
Glyma.13G161100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 27679171-27689170 Glycine max
Glyma.13G161100 10.0kb downstream 10.0kb downstream 13810 true Chr13: 27665361-27679170 Glycine max
Glyma.13G161100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 27665361-27675360 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121608735 5273 Angiosperm Singleton cluster - no MSA
122240676 5265 Fabidae Singleton cluster - no MSA
123985685 5270 Rosid Singleton cluster - no MSA
123561087 5271 Pentapetalae Singleton cluster - no MSA
122595879 5272 Eudicot Singleton cluster - no MSA
120881000 5274 Embryophyte Singleton cluster - no MSA
122921856 5275 Viridiplantae Singleton cluster - no MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.6318 0.0 60.1387   High
cufflinks 2.59444 0.0 15.6398    
cufflinks 0.666328 0.0 4.41588    
cufflinks 6.46925 0.0 21.947    
cufflinks 0.716938 0.0 4.6218    
cufflinks 0.267046 0.0 1.27715 Low Low
cufflinks 0.3 0.0 1.40033   Low
cufflinks 3.5609 0.0 10.986    
cufflinks 2.07332 0.0 7.42951    
cufflinks 0.286        
cufflinks 0.008     Low Low
cufflinks 0.447        
cufflinks 0.036     Low  
cufflinks 0.002     Low Low
cufflinks 0.039     Low  
cufflinks 2.687       High
cufflinks 0.197        
cufflinks 1.592        
cufflinks 1.056        
cufflinks 2.948       High
cufflinks 0.017     Low  
cufflinks 2.806       High
cufflinks 3.687       High
cufflinks 0.005     Low Low
cufflinks 2.728       High
cufflinks 0.041     Low  

0 Strain