Gene : Glyma.13G160300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12979:SF5 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 Genomic Order:  1603
Name:  ? Glyma.13G160300 Secondary Identifier:  ? PAC:30503544
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G160300 0.5kb upstream 0.5kb upstream 7285 true Chr13: 27589062-27596346 Glycine max
Glyma.13G160300 0.5kb upstream 0.5kb upstream 500 false Chr13: 27589062-27589561 Glycine max
Glyma.13G160300 0.5kb downstream 0.5kb downstream 7285 true Chr13: 27589562-27596846 Glycine max
Glyma.13G160300 0.5kb downstream 0.5kb downstream 500 false Chr13: 27596347-27596846 Glycine max
Glyma.13G160300 1.0kb upstream 1.0kb upstream 7785 true Chr13: 27588562-27596346 Glycine max
Glyma.13G160300 1.0kb upstream 1.0kb upstream 1000 false Chr13: 27588562-27589561 Glycine max
Glyma.13G160300 1.0kb downstream 1.0kb downstream 7785 true Chr13: 27589562-27597346 Glycine max
Glyma.13G160300 1.0kb downstream 1.0kb downstream 1000 false Chr13: 27596347-27597346 Glycine max
Glyma.13G160300 2.0kb upstream 2.0kb upstream 8785 true Chr13: 27587562-27596346 Glycine max
Glyma.13G160300 2.0kb upstream 2.0kb upstream 2000 false Chr13: 27587562-27589561 Glycine max
Glyma.13G160300 2.0kb downstream 2.0kb downstream 8785 true Chr13: 27589562-27598346 Glycine max
Glyma.13G160300 2.0kb downstream 2.0kb downstream 2000 false Chr13: 27596347-27598346 Glycine max
Glyma.13G160300 5.0kb upstream 5.0kb upstream 11785 true Chr13: 27584562-27596346 Glycine max
Glyma.13G160300 5.0kb upstream 5.0kb upstream 5000 false Chr13: 27584562-27589561 Glycine max
Glyma.13G160300 5.0kb downstream 5.0kb downstream 11785 true Chr13: 27589562-27601346 Glycine max
Glyma.13G160300 5.0kb downstream 5.0kb downstream 5000 false Chr13: 27596347-27601346 Glycine max
Glyma.13G160300 10.0kb upstream 10.0kb upstream 16785 true Chr13: 27579562-27596346 Glycine max
Glyma.13G160300 10.0kb upstream 10.0kb upstream 10000 false Chr13: 27579562-27589561 Glycine max
Glyma.13G160300 10.0kb downstream 10.0kb downstream 16785 true Chr13: 27589562-27606346 Glycine max
Glyma.13G160300 10.0kb downstream 10.0kb downstream 10000 false Chr13: 27596347-27606346 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041333 5273 Angiosperm View MSA
122303335 5265 Fabidae View MSA
124066173 5270 Rosid View MSA
123737593 5271 Pentapetalae View MSA
122791315 5272 Eudicot View MSA
121344566 5274 Embryophyte View MSA
123426128 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.34458 0.0 19.6493    
cufflinks 5.94326 0.0 16.0109    
cufflinks 5.78421 0.0 15.5935    
cufflinks 6.72244 0.0 18.0249    
cufflinks 7.8672 0.0 21.0169   High
cufflinks 5.14683 0.0 13.9626   Low
cufflinks 7.0989 0.0 19.0132    
cufflinks 6.51773 0.0 17.4895    
cufflinks 5.76765 0.0 15.5567    
cufflinks 3.376       Low
cufflinks 3.221       Low
cufflinks 3.862        
cufflinks 4.5        
cufflinks 5.662       High
cufflinks 3.276       Low
cufflinks 4.017        
cufflinks 3.929        
cufflinks 4.094        
cufflinks 4.434        
cufflinks 3.723        
cufflinks 3.805        
cufflinks 4.123        
cufflinks 4.394        
cufflinks 3.362       Low
cufflinks 3.622        
cufflinks 4.595       High

0 Strain