Gene : Glyma.13G172600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24072//PTHR24072:SF178 - RHO FAMILY GTPASE Genomic Order:  1726
Name:  ? Glyma.13G172600 Secondary Identifier:  ? PAC:30502721
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G172600 0.5kb upstream 0.5kb upstream 5410 true Chr13: 28658789-28664198 Glycine max
Glyma.13G172600 0.5kb upstream 0.5kb upstream 500 false Chr13: 28658789-28659288 Glycine max
Glyma.13G172600 0.5kb downstream 0.5kb downstream 5410 true Chr13: 28659289-28664698 Glycine max
Glyma.13G172600 0.5kb downstream 0.5kb downstream 500 false Chr13: 28664199-28664698 Glycine max
Glyma.13G172600 1.0kb upstream 1.0kb upstream 5910 true Chr13: 28658289-28664198 Glycine max
Glyma.13G172600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 28658289-28659288 Glycine max
Glyma.13G172600 1.0kb downstream 1.0kb downstream 5910 true Chr13: 28659289-28665198 Glycine max
Glyma.13G172600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 28664199-28665198 Glycine max
Glyma.13G172600 2.0kb upstream 2.0kb upstream 6910 true Chr13: 28657289-28664198 Glycine max
Glyma.13G172600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 28657289-28659288 Glycine max
Glyma.13G172600 2.0kb downstream 2.0kb downstream 6910 true Chr13: 28659289-28666198 Glycine max
Glyma.13G172600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 28664199-28666198 Glycine max
Glyma.13G172600 5.0kb upstream 5.0kb upstream 9910 true Chr13: 28654289-28664198 Glycine max
Glyma.13G172600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 28654289-28659288 Glycine max
Glyma.13G172600 5.0kb downstream 5.0kb downstream 9910 true Chr13: 28659289-28669198 Glycine max
Glyma.13G172600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 28664199-28669198 Glycine max
Glyma.13G172600 10.0kb upstream 10.0kb upstream 14910 true Chr13: 28649289-28664198 Glycine max
Glyma.13G172600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 28649289-28659288 Glycine max
Glyma.13G172600 10.0kb downstream 10.0kb downstream 14910 true Chr13: 28659289-28674198 Glycine max
Glyma.13G172600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 28664199-28674198 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121691304 5273 Angiosperm View MSA
122240681 5265 Fabidae Singleton cluster - no MSA
123985689 5270 Rosid Singleton cluster - no MSA
123647161 5271 Pentapetalae View MSA
122681160 5272 Eudicot View MSA
120963164 5274 Embryophyte View MSA
123003520 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.802472 0.0 5.69981    
cufflinks 0.240435 0.0 0.946316 Low  
cufflinks 0.181059 0.0 0.719031 Low  
cufflinks 5.88864 0.0 24.4227    
cufflinks 2.57337 0.0 13.947    
cufflinks 0.294489 0.0 2.74427    
cufflinks 0.155557 0.0 0.624608 Low Low
cufflinks 41.1258 0.0 123.152 High High
cufflinks 4.88983 0.0 21.08    
cufflinks 1.451       High
cufflinks 0.085        
cufflinks 0.011     Low Low
cufflinks 0.442       High
cufflinks 0.072     Low  
cufflinks 0.013     Low Low
cufflinks 0.088     Low  
cufflinks 0.699       High
cufflinks 0.076     Low  
cufflinks 0.049     Low  
cufflinks 0.109        
cufflinks 0.162        
cufflinks 0.11        
cufflinks 0.116        
cufflinks 0.094        
cufflinks 0.085     Low  
cufflinks 0.156        

0 Strain